From 3729f4d1b470858da2078f5e9a007323dc7c27b0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?S=C3=A9bastien=20Grall?= <seinormigr.grall@gmail.com>
Date: Wed, 26 Feb 2025 08:44:04 +0100
Subject: [PATCH 1/2] fix missing value in eyes diameter for Durif calculations
and fix plot type 3
---
R/report_silver_eel.R | 49 +++++++++++++++++++++++++++++++++----------
1 file changed, 38 insertions(+), 11 deletions(-)
diff --git a/R/report_silver_eel.R b/R/report_silver_eel.R
index 5fe7642..8ed5320 100644
--- a/R/report_silver_eel.R
+++ b/R/report_silver_eel.R
@@ -125,7 +125,7 @@ setMethod(
"charge",
signature = signature("report_silver_eel"),
definition = function(object,
- silent = FALSE) {
+ silent = FALSE) {
if (exists("ref_dc", envir_stacomi)) {
object@dc <- get("ref_dc", envir_stacomi)
} else {
@@ -178,10 +178,10 @@ setMethod(
validObject(object)
if (!silent)
funout(
- gettext(
- "Writing report_silver_eel in the environment envir_stacomi : write r_silver<-get('r_silver',envir_stacomi) ",
- domain = "R-stacomiR"
- )
+ gettext(
+ "Writing report_silver_eel in the environment envir_stacomi : write r_silver<-get('r_silver',envir_stacomi) ",
+ domain = "R-stacomiR"
+ )
)
assign("r_silver", object, envir_stacomi)
return(object)
@@ -288,6 +288,24 @@ setMethod(
lesdc <- r_silver@dc@dc_selected
parquant <- c("1786", "A111", "BBBB", "CCCC", "PECT")
parqual <- c("CONT", "LINP")
+
+ # test if BBBB or CCCC is missing then replace missing value by existing one (Durif calculation use mean of eyes)
+
+ if(any(c("BBBB","CCCC") %in% unique(arg$car_par_code)) & !(all(c("BBBB","CCCC") %in% unique(arg$car_par_code)))){
+ if(any(c("BBBB") %in% unique(arg$car_par_code))){
+ arg <- bind_rows( arg, arg %>% filter(car_par_code == "BBBB") %>% mutate(car_par_code = "CCCC"))
+ warning("Missing values horizontal eyes diameter (car_par_code = CCCC), we use vertical eyes diameter (car_par_code = BBBB) values instead")
+
+ }
+ if(any(c("CCCC") %in% unique(arg$car_par_code))){
+ arg <- bind_rows( arg, arg %>% filter(car_par_code == "CCCC") %>% mutate(car_par_code = "BBBB"))
+ warning("Missing values vertical eyes diameter (car_par_code = BBBB), we use horizontal eyes diameter (car_par_code = CCCC) values instead")
+ }
+ }
+
+
+
+
for (i in 1:length(lesdc)) {
dc <- lesdc[i]
other <-
@@ -336,6 +354,15 @@ setMethod(
drop = TRUE
)
+ if (!(all(parquant %in% sub("_NA","",colnames(matquant))))) {
+ funout(
+ gettext("All parameters needed for Durif Stages are not in the dataset", domain =
+ "R-stacomiR"),
+ arret = TRUE
+ )}
+
+
+
# this function will select the parameters one by one
# test them for pattern against column name
# and return the column. So a data frame of quantitative or qualitative parm are returned
@@ -419,11 +446,11 @@ setMethod(
silent = FALSE) {
#r_silver<-r_sample_char;require(ggplot2);plot.type="1"
#browser()
- oldpar <- par(no.readonly = TRUE)
- on.exit(par(oldpar))
+ oldpar <- par(no.readonly = TRUE)
+ on.exit(par(oldpar))
r_silver <- x
- plot.type <- as.character(plot.type)# to pass also characters
- plot.type <- match.arg(plot.type)
+ plot.type <- as.character(plot.type)# to pass also characters
+ plot.type <- match.arg(plot.type)
if (exists("r_silver", envir_stacomi)) {
r_silver <- get("r_silver", envir_stacomi)
} else {
@@ -733,7 +760,7 @@ setMethod(
indexdc <- datdc$dc == lesdc[i]
histxn <-
graphics::hist(datdc$BL[indexdc],
- breaks = seq(250, 1100, by = 50),
+ breaks = seq(250, ceiling(max(datdc$BL[indexdc],na.rm = TRUE)/50)*50, by = 50),
plot = FALSE)$density
if (i == 1)
histx <- histxn
@@ -847,7 +874,7 @@ setMethod(
histyn <-
hist(datdc$W[indexdc],
plot = FALSE,
- breaks = seq(0, 2500, by = 100))$density
+ breaks = seq(0, ceiling(max(datdc$W[indexdc],na.rm = TRUE)/100)*100, by = 100))$density
if (i == 1)
histy <- histyn
else
--
GitLab
From 7a8a4753008d447dbc77ec826584fc0b581c6ffc Mon Sep 17 00:00:00 2001
From: Laurent BEAULATON <laurent.beaulaton@ofb.gouv.fr>
Date: Fri, 28 Feb 2025 17:03:27 +0100
Subject: [PATCH 2/2] Resolve "Job Failed #1310579"
---
.gitlab-ci.yml | 20 +-
gitlab-ci/codecov.gitlab-ci.yml | 9 +-
gitlab-ci/image.gitlab-ci.yml | 5 +-
gitlab-ci/service.gitlab-ci.yml | 4 +-
gitlab-ci/testdb.gitlab-ci.yml | 15 +-
gitlab-ci/unittests.gitlab-ci.yml | 9 +-
renv.lock | 3170 ++++++++++++++++++++++++-----
renv/activate.R | 204 +-
8 files changed, 2767 insertions(+), 669 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index fddc64a..2d048f3 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -17,15 +17,21 @@ stages: # List of stages for jobs, and their order of execution
- deploy
variables:
- POSTGRES_USER: "postgres"
- POSTGRES_PASSWORD: "postgres"
- POSTGRES_HOSTNAME: "host_db"
- stacomi_db_path: "registry.forgemia.inra.fr/stacomi/stacomi_db"
+ PG_USER: stacomi_test
+ PG_USER_PASSWORD: stacomi_test
+ PG_DB: bd_contmig_nat
+ PG_HOST: host_db
+ PG_PORT: 5432
+ POSTGRES_PASSWORD: postgres
+ imagedb_name: "stacomi_db"
+ stacomi_db_path: $CI_REGISTRY/stacomi/$imagedb_name
db_image_name: "stacomi_db"
- db_version: "0.6.1"
- postgres_version: "14"
- postgis_version: "3.2"
+ db_version: "0.6.0"
+ postgres_version: "17"
+ postgis_version: "3.5"
db_image_tagdev: "$db_version-pg$postgres_version-ps$postgis_version"
+ r_image_dev: rocker/tidyverse:latest
+ r_image: rocker/tidyverse:latest
R_LIBS_USER: "ci/lib"
RENV_PATHS_CACHE: "cache"
RENV_PATHS_LIBRARY: "renv/library"
diff --git a/gitlab-ci/codecov.gitlab-ci.yml b/gitlab-ci/codecov.gitlab-ci.yml
index 599977e..cbd6072 100644
--- a/gitlab-ci/codecov.gitlab-ci.yml
+++ b/gitlab-ci/codecov.gitlab-ci.yml
@@ -5,7 +5,14 @@
script:
- Rscript -e 'pak::pkg_install(pkg = c("covr", "DT"), upgrade = FALSE)'
- Rscript -e 'pak::pak(pkg = ".", upgrade = FALSE)'
- - Rscript -e 'Sys.setenv("NOT_CRAN"= "true"); devtools::load_all(); options(stacomiR.dbname = "bd_contmig_nat",stacomiR.host = "${POSTGRES_HOSTNAME}", stacomiR.port = "5432", stacomiR.user = "${POSTGRES_USER}", stacomiR.password ="${POSTGRES_PASSWORD}");covr::gitlab(quiet = FALSE)'
+ - |
+ Rscript -e 'Sys.setenv("NOT_CRAN"= "true"); devtools::load_all();
+ options(stacomiR.dbname = "'$PG_DB'",
+ stacomiR.host = "'$PG_HOST'",
+ stacomiR.port = "'$PG_PORT'",
+ stacomiR.user = "'$PG_USER'",
+ stacomiR.password ="'PG_USER_PASSWORD'");
+ covr::gitlab(quiet = FALSE)'
coverage: '/Coverage: \d+\.\d+/'
artifacts:
when: always
diff --git a/gitlab-ci/image.gitlab-ci.yml b/gitlab-ci/image.gitlab-ci.yml
index d483c19..f56b3cf 100644
--- a/gitlab-ci/image.gitlab-ci.yml
+++ b/gitlab-ci/image.gitlab-ci.yml
@@ -3,9 +3,8 @@
#######################
# for any branch, but main
.image-dev:
- image: rocker/tidyverse:latest
-
+ image: ${CI_DEPENDENCY_PROXY_DIRECT_GROUP_IMAGE_PREFIX}/${r_image_dev}
#######################
# for main branch only
.image-prod:
- image: rocker/tidyverse:latest
\ No newline at end of file
+ image: ${CI_DEPENDENCY_PROXY_DIRECT_GROUP_IMAGE_PREFIX}/${r_image}
\ No newline at end of file
diff --git a/gitlab-ci/service.gitlab-ci.yml b/gitlab-ci/service.gitlab-ci.yml
index 9cca718..334c08d 100644
--- a/gitlab-ci/service.gitlab-ci.yml
+++ b/gitlab-ci/service.gitlab-ci.yml
@@ -1,10 +1,10 @@
.service-dev:
services:
- name: ${stacomi_db_path}/${db_image_name}:${db_image_tagdev}
- alias: ${POSTGRES_HOSTNAME}
+ alias: $PG_HOST
.service-prod:
services:
- name: ${stacomi_db_path}/${db_image_name}:latest
- alias: ${POSTGRES_HOSTNAME}
+ alias: $PG_HOST
diff --git a/gitlab-ci/testdb.gitlab-ci.yml b/gitlab-ci/testdb.gitlab-ci.yml
index d53a046..19aada4 100644
--- a/gitlab-ci/testdb.gitlab-ci.yml
+++ b/gitlab-ci/testdb.gitlab-ci.yml
@@ -1,14 +1,17 @@
.test_db:
stage: testdb
- image: postgres:${postgres_version}
+ image: ${CI_DEPENDENCY_PROXY_DIRECT_GROUP_IMAGE_PREFIX}/postgres:${postgres_version}
before_script:
- - sleep 120 # waiting postgresql
+ - echo "En attente de la disponibilité de PostgreSQL"
+ - |
+ until pg_isready -U $PG_USER -h $PG_HOST -p $PG_PORT -d $PG_DB; do
+ sleep 2
+ done
- psql --version
- - export PGPASSWORD=$POSTGRES_PASSWORD
- - psql -U ${POSTGRES_USER} -h ${POSTGRES_HOSTNAME} -c "SELECT * FROM pg_catalog.pg_tables WHERE schemaname != 'pg_catalog' AND schemaname != 'information_schema';"
+ - export PGPASSWORD=$PG_USER_PASSWORD
script:
- - psql -U ${POSTGRES_USER} -h ${POSTGRES_HOSTNAME} -c "select * from test.t_dispositifcomptage_dic" bd_contmig_nat
- - export PGPASSWORD=test && psql -U test -h ${POSTGRES_HOSTNAME} -c "select * from test.t_dispositifcomptage_dic" bd_contmig_nat # test avec l'utilisateur
+ - psql -U $PG_USER -h $PG_HOST -p $PG_PORT -d $PG_DB -c "SELECT version();"
+ - psql -U $PG_USER -h $PG_HOST -p $PG_PORT -d $PG_DB -c "SELECT * from test.t_dispositifcomptage_dic"
# en dev
test_db-dev:
diff --git a/gitlab-ci/unittests.gitlab-ci.yml b/gitlab-ci/unittests.gitlab-ci.yml
index 1170a9a..d7cf5f9 100644
--- a/gitlab-ci/unittests.gitlab-ci.yml
+++ b/gitlab-ci/unittests.gitlab-ci.yml
@@ -3,8 +3,13 @@
stage: test
script:
- Rscript -e 'pak::pkg_install(pkg = c("XML"), upgrade = FALSE)'
- - r -e "devtools::load_all();
- options(stacomiR.dbname = 'bd_contmig_nat', stacomiR.host = '${POSTGRES_HOSTNAME}', stacomiR.port = '5432', stacomiR.user = '${POSTGRES_USER}', stacomiR.password = '${POSTGRES_PASSWORD}');
+ - |
+ r -e "devtools::load_all();
+ options(stacomiR.dbname = "'$PG_DB'",
+ stacomiR.host = "'$PG_HOST'",
+ stacomiR.port = "'$PG_PORT'",
+ stacomiR.user = "'$PG_USER'",
+ stacomiR.password ="'PG_USER_PASSWORD'");
test <- capture.output(devtools::test(reporter='junit')) ;
XML::saveXML(XML::xmlParse(test[grep('?xml version', test):length(test)]), file = 'public/test.xml')"
artifacts:
diff --git a/renv.lock b/renv.lock
index b518bbc..ec05333 100644
--- a/renv.lock
+++ b/renv.lock
@@ -1,6 +1,6 @@
{
"R": {
- "Version": "4.4.1",
+ "Version": "4.4.2",
"Repositories": [
{
"Name": "CRAN",
@@ -13,1143 +13,3215 @@
"Package": "DBI",
"Version": "1.2.3",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "methods"
+ "Title": "R Database Interface",
+ "Date": "2024-06-02",
+ "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )",
+ "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.",
+ "License": "LGPL (>= 2.1)",
+ "URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI",
+ "BugReports": "https://github.com/r-dbi/DBI/issues",
+ "Depends": [
+ "methods",
+ "R (>= 3.0.0)"
],
- "Hash": "065ae649b05f1ff66bb0c793107508f5"
+ "Suggests": [
+ "arrow",
+ "blob",
+ "covr",
+ "DBItest",
+ "dbplyr",
+ "downlit",
+ "dplyr",
+ "glue",
+ "hms",
+ "knitr",
+ "magrittr",
+ "nanoarrow (>= 0.3.0.1)",
+ "RMariaDB",
+ "rmarkdown",
+ "rprojroot",
+ "RSQLite (>= 1.1-2)",
+ "testthat (>= 3.0.0)",
+ "vctrs",
+ "xml2"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/autostyle/scope": "line_breaks",
+ "Config/autostyle/strict": "false",
+ "Config/Needs/check": "r-dbi/DBItest",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.1",
+ "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr",
+ "Config/testthat/edition": "3",
+ "NeedsCompilation": "no",
+ "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd]",
+ "Maintainer": "Kirill Müller <kirill@cynkra.com>",
+ "Repository": "CRAN"
},
"Formula": {
"Package": "Formula",
"Version": "1.2-5",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Date": "2023-02-23",
+ "Title": "Extended Model Formulas",
+ "Description": "Infrastructure for extended formulas with multiple parts on the right-hand side and/or multiple responses on the left-hand side (see <doi:10.18637/jss.v034.i01>).",
+ "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Yves\", family = \"Croissant\", role = \"aut\", email = \"Yves.Croissant@univ-reunion.fr\"))",
+ "Depends": [
+ "R (>= 2.0.0)",
"stats"
],
- "Hash": "7a29697b75e027767a53fde6c903eca7"
+ "License": "GPL-2 | GPL-3",
+ "NeedsCompilation": "no",
+ "Author": "Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>), Yves Croissant [aut]",
+ "Maintainer": "Achim Zeileis <Achim.Zeileis@R-project.org>",
+ "Repository": "CRAN"
},
"Hmisc": {
"Package": "Hmisc",
- "Version": "5.1-3",
+ "Version": "5.2-2",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "Formula",
- "R",
- "base64enc",
+ "Date": "2025-01-10",
+ "Title": "Harrell Miscellaneous",
+ "Authors@R": "c(person(given = \"Frank E\", family = \"Harrell Jr\", role = c(\"aut\", \"cre\"), email = \"fh@fharrell.com\", comment = c(ORCID = \"0000-0002-8271-5493\")), person(given = \"Charles\", family = \"Dupont\", role = \"ctb\", email = \"charles.dupont@vumc.org\", comment = \"contributed several functions and maintains latex functions\"))",
+ "Maintainer": "Frank E Harrell Jr <fh@fharrell.com>",
+ "Depends": [
+ "R (>= 4.2.0)"
+ ],
+ "Imports": [
+ "methods",
+ "ggplot2",
"cluster",
- "colorspace",
- "data.table",
+ "rpart",
+ "nnet",
"foreign",
- "ggplot2",
+ "gtable",
"grid",
"gridExtra",
- "gtable",
- "htmlTable",
+ "data.table",
+ "htmlTable (>= 1.11.0)",
+ "viridis",
"htmltools",
- "knitr",
- "methods",
- "nnet",
+ "base64enc",
+ "colorspace",
"rmarkdown",
- "rpart",
- "viridis"
- ],
- "Hash": "9a446aea30bff7e8ee20f4c0973e8851"
+ "knitr",
+ "Formula"
+ ],
+ "Suggests": [
+ "survival",
+ "qreport",
+ "acepack",
+ "chron",
+ "rms",
+ "mice",
+ "rstudioapi",
+ "tables",
+ "plotly (>= 4.5.6)",
+ "rlang",
+ "plyr",
+ "VGAM",
+ "leaps",
+ "pcaPP",
+ "digest",
+ "parallel",
+ "polspline",
+ "abind",
+ "kableExtra",
+ "rio",
+ "lattice",
+ "latticeExtra",
+ "gt",
+ "sparkline",
+ "jsonlite",
+ "htmlwidgets",
+ "qs",
+ "getPass",
+ "keyring",
+ "safer",
+ "htm2txt"
+ ],
+ "Description": "Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, simulation, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.",
+ "License": "GPL (>= 2)",
+ "LazyLoad": "Yes",
+ "URL": "https://hbiostat.org/R/Hmisc/",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "NeedsCompilation": "yes",
+ "Author": "Frank E Harrell Jr [aut, cre] (<https://orcid.org/0000-0002-8271-5493>), Charles Dupont [ctb] (contributed several functions and maintains latex functions)",
+ "Repository": "CRAN"
},
"MASS": {
"Package": "MASS",
- "Version": "7.3-61",
+ "Version": "7.3-64",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Priority": "recommended",
+ "Date": "2025-01-06",
+ "Revision": "$Rev: 3680 $",
+ "Depends": [
+ "R (>= 4.4.0)",
"grDevices",
"graphics",
- "methods",
"stats",
"utils"
],
- "Hash": "0cafd6f0500e5deba33be22c46bf6055"
+ "Imports": [
+ "methods"
+ ],
+ "Suggests": [
+ "lattice",
+ "nlme",
+ "nnet",
+ "survival"
+ ],
+ "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))",
+ "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
+ "Title": "Support Functions and Datasets for Venables and Ripley's MASS",
+ "LazyData": "yes",
+ "ByteCompile": "yes",
+ "License": "GPL-2 | GPL-3",
+ "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
+ "Contact": "<MASS@stats.ox.ac.uk>",
+ "NeedsCompilation": "yes",
+ "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)",
+ "Maintainer": "Brian Ripley <Brian.Ripley@R-project.org>",
+ "Repository": "CRAN"
},
"Matrix": {
"Package": "Matrix",
- "Version": "1.7-0",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Version": "1.7-2",
+ "Source": "Repository",
+ "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h",
+ "Date": "2025-01-20",
+ "Priority": "recommended",
+ "Title": "Sparse and Dense Matrix Classes and Methods",
+ "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
+ "License": "GPL (>= 2) | file LICENCE",
+ "URL": "https://Matrix.R-forge.R-project.org",
+ "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
+ "Contact": "Matrix-authors@R-project.org",
+ "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))",
+ "Depends": [
+ "R (>= 4.4)",
+ "methods"
+ ],
+ "Imports": [
"grDevices",
"graphics",
"grid",
"lattice",
- "methods",
"stats",
"utils"
],
- "Hash": "1920b2f11133b12350024297d8a4ff4a"
+ "Suggests": [
+ "MASS",
+ "datasets",
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+ "Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue, htmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr, rprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2",
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+ "NeedsCompilation": "no",
+ "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], Garrick Aden-Buie [aut] (<https://orcid.org/0000-0002-7111-0077>), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)",
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+ "Repository": "CRAN"
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"Package": "cachem",
"Version": "1.1.0",
"Source": "Repository",
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- "Requirements": [
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- "rlang"
+ "Title": "Cache R Objects with Automatic Pruning",
+ "Description": "Key-value stores with automatic pruning. Caches can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.",
+ "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", c(\"aut\", \"cre\")), person(family = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")))",
+ "License": "MIT + file LICENSE",
+ "Encoding": "UTF-8",
+ "ByteCompile": "true",
+ "URL": "https://cachem.r-lib.org/, https://github.com/r-lib/cachem",
+ "Imports": [
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+ "fastmap (>= 1.2.0)"
+ ],
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],
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+ "Config/Needs/website": "pkgdown",
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+ "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Winston Chang <winston@posit.co>",
+ "Repository": "CRAN"
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"Version": "2.3.2",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "backports",
+ "Type": "Package",
+ "Title": "Fast and Versatile Argument Checks",
+ "Description": "Tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.",
+ "Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"michellang@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Bernd\", \"Bischl\", NULL, \"bernd_bischl@gmx.net\", role = \"ctb\"), person(\"Dénes\", \"Tóth\", NULL, \"toth.denes@kogentum.hu\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4262-3217\")) )",
+ "URL": "https://mllg.github.io/checkmate/, https://github.com/mllg/checkmate",
+ "URLNote": "https://github.com/mllg/checkmate",
+ "BugReports": "https://github.com/mllg/checkmate/issues",
+ "NeedsCompilation": "yes",
+ "ByteCompile": "yes",
+ "Encoding": "UTF-8",
+ "Depends": [
+ "R (>= 3.0.0)"
+ ],
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+ "backports (>= 1.1.0)",
"utils"
],
- "Hash": "0e14e01ce07e7c88fd25de6d4260d26b"
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+ "R6",
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+ "data.table (>= 1.9.8)",
+ "devtools",
+ "ggplot2",
+ "knitr",
+ "magrittr",
+ "microbenchmark",
+ "rmarkdown",
+ "testthat (>= 3.0.4)",
+ "tinytest (>= 1.1.0)",
+ "tibble"
+ ],
+ "License": "BSD_3_clause + file LICENSE",
+ "VignetteBuilder": "knitr",
+ "RoxygenNote": "7.3.2",
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+ "Author": "Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>), Bernd Bischl [ctb], Dénes Tóth [ctb] (<https://orcid.org/0000-0003-4262-3217>)",
+ "Maintainer": "Michel Lang <michellang@gmail.com>",
+ "Repository": "CRAN"
},
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- "Version": "3.6.3",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Version": "3.6.4",
+ "Source": "Repository",
+ "Title": "Helpers for Developing Command Line Interfaces",
+ "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli",
+ "BugReports": "https://github.com/r-lib/cli/issues",
+ "Depends": [
+ "R (>= 3.4)"
+ ],
+ "Imports": [
"utils"
],
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+ "callr",
+ "covr",
+ "crayon",
+ "digest",
+ "glue (>= 1.6.0)",
+ "grDevices",
+ "htmltools",
+ "htmlwidgets",
+ "knitr",
+ "methods",
+ "processx",
+ "ps (>= 1.3.4.9000)",
+ "rlang (>= 1.0.2.9003)",
+ "rmarkdown",
+ "rprojroot",
+ "rstudioapi",
+ "testthat (>= 3.2.0)",
+ "tibble",
+ "whoami",
+ "withr"
+ ],
+ "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "NeedsCompilation": "yes",
+ "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Gábor Csárdi <gabor@posit.co>",
+ "Repository": "CRAN"
},
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"Package": "cluster",
- "Version": "2.1.6",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "grDevices",
+ "Version": "2.1.8",
+ "Source": "Repository",
+ "VersionNote": "Last CRAN: 2.1.7 on 2024-12-06; 2.1.6 on 2023-11-30; 2.1.5 on 2023-11-27",
+ "Date": "2024-12-10",
+ "Priority": "recommended",
+ "Title": "\"Finding Groups in Data\": Cluster Analysis Extended Rousseeuw et al.",
+ "Description": "Methods for Cluster analysis. Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".",
+ "Maintainer": "Martin Maechler <maechler@stat.math.ethz.ch>",
+ "Authors@R": "c(person(\"Martin\",\"Maechler\", role = c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) ,person(\"Peter\", \"Rousseeuw\", role=\"aut\", email=\"peter.rousseeuw@kuleuven.be\", comment = c(\"Fortran original\", ORCID = \"0000-0002-3807-5353\")) ,person(\"Anja\", \"Struyf\", role=\"aut\", comment= \"S original\") ,person(\"Mia\", \"Hubert\", role=\"aut\", email= \"Mia.Hubert@uia.ua.ac.be\", comment = c(\"S original\", ORCID = \"0000-0001-6398-4850\")) ,person(\"Kurt\", \"Hornik\", role=c(\"trl\", \"ctb\"), email=\"Kurt.Hornik@R-project.org\", comment=c(\"port to R; maintenance(1999-2000)\", ORCID=\"0000-0003-4198-9911\")) ,person(\"Matthias\", \"Studer\", role=\"ctb\") ,person(\"Pierre\", \"Roudier\", role=\"ctb\") ,person(\"Juan\", \"Gonzalez\", role=\"ctb\") ,person(\"Kamil\", \"Kozlowski\", role=\"ctb\") ,person(\"Erich\", \"Schubert\", role=\"ctb\", comment = c(\"fastpam options for pam()\", ORCID = \"0000-0001-9143-4880\")) ,person(\"Keefe\", \"Murphy\", role=\"ctb\", comment = \"volume.ellipsoid({d >= 3})\") #not yet ,person(\"Fischer-Rasmussen\", \"Kasper\", role = \"ctb\", comment = \"Gower distance for CLARA\") )",
+ "Depends": [
+ "R (>= 3.5.0)"
+ ],
+ "Imports": [
"graphics",
+ "grDevices",
"stats",
"utils"
],
- "Hash": "0aaa05204035dc43ea0004b9c76611dd"
+ "Suggests": [
+ "MASS",
+ "Matrix"
+ ],
+ "SuggestsNote": "MASS: two examples using cov.rob() and mvrnorm(); Matrix tools for testing",
+ "Enhances": [
+ "mvoutlier",
+ "fpc",
+ "ellipse",
+ "sfsmisc"
+ ],
+ "EnhancesNote": "xref-ed in man/*.Rd",
+ "LazyLoad": "yes",
+ "LazyData": "yes",
+ "ByteCompile": "yes",
+ "BuildResaveData": "no",
+ "License": "GPL (>= 2)",
+ "URL": "https://svn.r-project.org/R-packages/trunk/cluster/",
+ "NeedsCompilation": "yes",
+ "Author": "Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Peter Rousseeuw [aut] (Fortran original, <https://orcid.org/0000-0002-3807-5353>), Anja Struyf [aut] (S original), Mia Hubert [aut] (S original, <https://orcid.org/0000-0001-6398-4850>), Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000), <https://orcid.org/0000-0003-4198-9911>), Matthias Studer [ctb], Pierre Roudier [ctb], Juan Gonzalez [ctb], Kamil Kozlowski [ctb], Erich Schubert [ctb] (fastpam options for pam(), <https://orcid.org/0000-0001-9143-4880>), Keefe Murphy [ctb] (volume.ellipsoid({d >= 3}))",
+ "Repository": "CRAN"
},
"colorspace": {
"Package": "colorspace",
"Version": "2.1-1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "grDevices",
+ "Date": "2024-07-26",
+ "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes",
+ "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))",
+ "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/> and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, <doi:10.18637/jss.v096.i01>).",
+ "Depends": [
+ "R (>= 3.0.0)",
+ "methods"
+ ],
+ "Imports": [
"graphics",
- "methods",
+ "grDevices",
"stats"
],
- "Hash": "d954cb1c57e8d8b756165d7ba18aa55a"
+ "Suggests": [
+ "datasets",
+ "utils",
+ "KernSmooth",
+ "MASS",
+ "kernlab",
+ "mvtnorm",
+ "vcd",
+ "tcltk",
+ "shiny",
+ "shinyjs",
+ "ggplot2",
+ "dplyr",
+ "scales",
+ "grid",
+ "png",
+ "jpeg",
+ "knitr",
+ "rmarkdown",
+ "RColorBrewer",
+ "rcartocolor",
+ "scico",
+ "viridis",
+ "wesanderson"
+ ],
+ "VignetteBuilder": "knitr",
+ "License": "BSD_3_clause + file LICENSE",
+ "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/",
+ "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html",
+ "LazyData": "yes",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.1",
+ "NeedsCompilation": "yes",
+ "Author": "Ross Ihaka [aut], Paul Murrell [aut] (<https://orcid.org/0000-0002-3224-8858>), Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Jason C. Fisher [aut] (<https://orcid.org/0000-0001-9032-8912>), Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>), Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Claire D. McWhite [aut] (<https://orcid.org/0000-0001-7346-3047>), Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>)",
+ "Maintainer": "Achim Zeileis <Achim.Zeileis@R-project.org>",
+ "Repository": "CRAN"
},
"cpp11": {
"Package": "cpp11",
- "Version": "0.5.0",
+ "Version": "0.5.1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R"
+ "Title": "A C++11 Interface for R's C Interface",
+ "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Provides a header only, C++11 interface to R's C interface. Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11",
+ "BugReports": "https://github.com/r-lib/cpp11/issues",
+ "Depends": [
+ "R (>= 4.0.0)"
+ ],
+ "Suggests": [
+ "bench",
+ "brio",
+ "callr",
+ "cli",
+ "covr",
+ "decor",
+ "desc",
+ "ggplot2",
+ "glue",
+ "knitr",
+ "lobstr",
+ "mockery",
+ "progress",
+ "rmarkdown",
+ "scales",
+ "Rcpp",
+ "testthat (>= 3.2.0)",
+ "tibble",
+ "utils",
+ "vctrs",
+ "withr"
],
- "Hash": "91570bba75d0c9d3f1040c835cee8fba"
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "NeedsCompilation": "no",
+ "Author": "Davis Vaughan [aut, cre] (<https://orcid.org/0000-0003-4777-038X>), Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Davis Vaughan <davis@posit.co>",
+ "Repository": "CRAN"
},
"data.table": {
"Package": "data.table",
- "Version": "1.16.0",
+ "Version": "1.17.0",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Title": "Extension of `data.frame`",
+ "Depends": [
+ "R (>= 3.3.0)"
+ ],
+ "Imports": [
"methods"
],
- "Hash": "fb24e05d4a91d8b1c7ff8e284bde834a"
+ "Suggests": [
+ "bit64 (>= 4.0.0)",
+ "bit (>= 4.0.4)",
+ "R.utils",
+ "xts",
+ "zoo (>= 1.8-1)",
+ "yaml",
+ "knitr",
+ "markdown"
+ ],
+ "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.",
+ "License": "MPL-2.0 | file LICENSE",
+ "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table",
+ "BugReports": "https://github.com/Rdatatable/data.table/issues",
+ "VignetteBuilder": "knitr",
+ "Encoding": "UTF-8",
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+ "NeedsCompilation": "yes",
+ "Author": "Tyson Barrett [aut, cre] (<https://orcid.org/0000-0002-2137-1391>), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (<https://orcid.org/0000-0003-0787-087X>), Toby Hocking [aut] (<https://orcid.org/0000-0002-3146-0865>), Benjamin Schwendinger [aut] (<https://orcid.org/0000-0003-3315-8114>), Ivan Krylov [aut] (<https://orcid.org/0000-0002-0172-3812>), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb], @marc-outins [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb]",
+ "Maintainer": "Tyson Barrett <t.barrett88@gmail.com>",
+ "Repository": "CRAN"
},
"digest": {
"Package": "digest",
"Version": "0.6.37",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\"), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\"), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\"), person(\"Ion\", \"Suruceanu\", role=\"ctb\"), person(\"Bill\", \"Denney\", role=\"ctb\"), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\"), person(\"Sergey\", \"Fedorov\", role=\"ctb\"), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\"), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\"))",
+ "Date": "2024-08-19",
+ "Title": "Create Compact Hash Digests of R Objects",
+ "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.",
+ "URL": "https://github.com/eddelbuettel/digest, https://dirk.eddelbuettel.com/code/digest.html",
+ "BugReports": "https://github.com/eddelbuettel/digest/issues",
+ "Depends": [
+ "R (>= 3.3.0)"
+ ],
+ "Imports": [
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],
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+ ],
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+ "Encoding": "UTF-8",
+ "NeedsCompilation": "yes",
+ "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (<https://orcid.org/0000-0002-7579-5165>), Simon Urbanek [ctb] (<https://orcid.org/0000-0003-2297-1732>), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (<https://orcid.org/0000-0001-5180-0567>), Qiang Kou [ctb] (<https://orcid.org/0000-0001-6786-5453>), Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>), Michel Lang [ctb] (<https://orcid.org/0000-0001-9754-0393>), Viliam Simko [ctb], Kurt Hornik [ctb] (<https://orcid.org/0000-0003-4198-9911>), Radford Neal [ctb] (<https://orcid.org/0000-0002-2473-3407>), Kendon Bell [ctb] (<https://orcid.org/0000-0002-9093-8312>), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (<https://orcid.org/0000-0003-1878-3253>), Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (<https://orcid.org/0000-0001-7813-818X>), Mark van der Loo [ctb] (<https://orcid.org/0000-0002-9807-4686>), Chris Muir [ctb] (<https://orcid.org/0000-0003-2555-3878>), Moritz Beller [ctb] (<https://orcid.org/0000-0003-4852-0526>), Sebastian Campbell [ctb], Winston Chang [ctb] (<https://orcid.org/0000-0002-1576-2126>), Dean Attali [ctb] (<https://orcid.org/0000-0002-5645-3493>), Michael Chirico [ctb] (<https://orcid.org/0000-0003-0787-087X>), Kevin Ushey [ctb]",
+ "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
+ "Repository": "CRAN"
},
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"Version": "1.1.4",
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+ "Type": "Package",
+ "Title": "A Grammar of Data Manipulation",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Kirill\", \"Müller\", role = \"aut\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A fast, consistent tool for working with data frame like objects, both in memory and out of memory.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr",
+ "BugReports": "https://github.com/tidyverse/dplyr/issues",
+ "Depends": [
+ "R (>= 3.5.0)"
+ ],
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+ "covr",
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+ "dbplyr (>= 2.2.1)",
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+ "Lahman",
+ "lobstr",
+ "microbenchmark",
+ "nycflights13",
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+ "rmarkdown",
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+ "RPostgreSQL",
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+ "Maintainer": "Hadley Wickham <hadley@posit.co>",
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+ "Title": "Parsing and Evaluation Tools that Provide More Details than the Default",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Yihui\", \"Xie\", role = \"aut\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Michael\", \"Lawrence\", role = \"ctb\"), person(\"Thomas\", \"Kluyver\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Adam\", \"Ryczkowski\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Michel\", \"Lang\", role = \"ctb\"), person(\"Karolis\", \"KonceviÄius\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://evaluate.r-lib.org/, https://github.com/r-lib/evaluate",
+ "BugReports": "https://github.com/r-lib/evaluate/issues",
+ "Depends": [
+ "R (>= 3.6.0)"
+ ],
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+ "Maintainer": "Hadley Wickham <hadley@posit.co>",
+ "Repository": "CRAN"
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"Package": "fansi",
"Version": "1.0.6",
"Source": "Repository",
- "Repository": "CRAN",
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+ "Title": "ANSI Control Sequence Aware String Functions",
+ "Description": "Counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.",
+ "Authors@R": "c( person(\"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person(\"Elliott\", \"Sales De Andrade\", role=\"ctb\"), person(family=\"R Core Team\", email=\"R-core@r-project.org\", role=\"cph\", comment=\"UTF8 byte length calcs from src/util.c\" ))",
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+ "R (>= 3.1.0)"
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+ "License": "GPL-2 | GPL-3",
+ "URL": "https://github.com/brodieG/fansi",
+ "BugReports": "https://github.com/brodieG/fansi/issues",
+ "VignetteBuilder": "knitr",
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+ "NeedsCompilation": "yes",
+ "Author": "Brodie Gaslam [aut, cre], Elliott Sales De Andrade [ctb], R Core Team [cph] (UTF8 byte length calcs from src/util.c)",
+ "Maintainer": "Brodie Gaslam <brodie.gaslam@yahoo.com>",
+ "Repository": "CRAN"
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"Version": "2.1.2",
"Source": "Repository",
- "Repository": "CRAN",
- "Hash": "680887028577f3fa2a81e410ed0d6e42"
+ "Type": "Package",
+ "Title": "High Performance Colour Space Manipulation",
+ "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Berendea\", \"Nicolae\", role = \"aut\", comment = \"Author of the ColorSpace C++ library\"), person(\"Romain\", \"François\", , \"romain@purrple.cat\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "The encoding of colour can be handled in many different ways, using different colour spaces. As different colour spaces have different uses, efficient conversion between these representations are important. The 'farver' package provides a set of functions that gives access to very fast colour space conversion and comparisons implemented in C++, and offers speed improvements over the 'convertColor' function in the 'grDevices' package.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://farver.data-imaginist.com, https://github.com/thomasp85/farver",
+ "BugReports": "https://github.com/thomasp85/farver/issues",
+ "Suggests": [
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+ "NeedsCompilation": "yes",
+ "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Posit, PBC [cph, fnd]",
+ "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
+ "Repository": "CRAN"
},
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+ "Title": "Fast Data Structures",
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+ "Description": "Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids this memory leak issue by implementing the map using data structures in C++.",
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+ "URL": "https://github.com/rstudio/fontawesome, https://rstudio.github.io/fontawesome/",
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+ "Title": "Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...",
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+ "Contact": "see 'MailingList'",
+ "Copyright": "see file COPYRIGHTS",
+ "Description": "Reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files.",
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+ "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.",
+ "License": "MIT + file LICENSE",
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+ "BugReports": "https://github.com/r-lib/fs/issues",
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"Version": "0.1.3",
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+ "Title": "Common S3 Generics not Provided by Base R Methods Related to Model Fitting",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"Max\", \"Kuhn\", , \"max@rstudio.com\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@rstudio.com\", role = \"aut\"), person(\"RStudio\", role = \"cph\") )",
+ "Description": "In order to reduce potential package dependencies and conflicts, generics provides a number of commonly used S3 generics.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://generics.r-lib.org, https://github.com/r-lib/generics",
+ "BugReports": "https://github.com/r-lib/generics/issues",
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+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
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+ "URL": "https://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2",
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+ "Repository": "CRAN"
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+ "Title": "Arrange 'Grobs' in Tables",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable",
+ "BugReports": "https://github.com/r-lib/gtable/issues",
+ "Depends": [
+ "R (>= 4.0)"
+ ],
+ "Imports": [
"cli",
"glue",
"grid",
"lifecycle",
- "rlang"
+ "rlang (>= 1.1.0)",
+ "stats"
],
- "Hash": "e18861963cbc65a27736e02b3cd3c4a0"
+ "Suggests": [
+ "covr",
+ "ggplot2",
+ "knitr",
+ "profvis",
+ "rmarkdown",
+ "testthat (>= 3.0.0)"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Config/usethis/last-upkeep": "2024-10-25",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "NeedsCompilation": "no",
+ "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
+ "Repository": "CRAN"
},
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"Package": "highr",
"Version": "0.11",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "xfun"
+ "Type": "Package",
+ "Title": "Syntax Highlighting for R Source Code",
+ "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Yixuan\", \"Qiu\", role = \"aut\"), person(\"Christopher\", \"Gandrud\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\") )",
+ "Description": "Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package (<https://gitlab.com/saalen/highlight>).",
+ "Depends": [
+ "R (>= 3.3.0)"
+ ],
+ "Imports": [
+ "xfun (>= 0.18)"
],
- "Hash": "d65ba49117ca223614f71b60d85b8ab7"
+ "Suggests": [
+ "knitr",
+ "markdown",
+ "testit"
+ ],
+ "License": "GPL",
+ "URL": "https://github.com/yihui/highr",
+ "BugReports": "https://github.com/yihui/highr/issues",
+ "VignetteBuilder": "knitr",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.1",
+ "NeedsCompilation": "no",
+ "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
+ "Maintainer": "Yihui Xie <xie@yihui.name>",
+ "Repository": "CRAN"
},
"hms": {
"Package": "hms",
"Version": "1.1.3",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
+ "Title": "Pretty Time of Day",
+ "Date": "2023-03-21",
+ "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )",
+ "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.",
+ "Imports": [
"lifecycle",
"methods",
"pkgconfig",
- "rlang",
- "vctrs"
+ "rlang (>= 1.0.2)",
+ "vctrs (>= 0.3.8)"
],
- "Hash": "b59377caa7ed00fa41808342002138f9"
+ "Suggests": [
+ "crayon",
+ "lubridate",
+ "pillar (>= 1.1.0)",
+ "testthat (>= 3.0.0)"
+ ],
+ "License": "MIT + file LICENSE",
+ "Encoding": "UTF-8",
+ "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms",
+ "BugReports": "https://github.com/tidyverse/hms/issues",
+ "RoxygenNote": "7.2.3",
+ "Config/testthat/edition": "3",
+ "Config/autostyle/scope": "line_breaks",
+ "Config/autostyle/strict": "false",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "NeedsCompilation": "no",
+ "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd], RStudio [fnd]",
+ "Maintainer": "Kirill Müller <kirill@cynkra.com>",
+ "Repository": "CRAN"
},
"htmlTable": {
"Package": "htmlTable",
"Version": "2.4.3",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Title": "Advanced Tables for Markdown/HTML",
+ "Authors@R": "c( person(\"Max\", \"Gordon\", email = \"max@gforge.se\", role = c(\"aut\", \"cre\")), person(\"Stephen\", \"Gragg\", role=c(\"aut\")), person(\"Peter\", \"Konings\", role=c(\"aut\")))",
+ "Maintainer": "Max Gordon <max@gforge.se>",
+ "Description": "Tables with state-of-the-art layout elements such as row spanners, column spanners, table spanners, zebra striping, and more. While allowing advanced layout, the underlying css-structure is simple in order to maximize compatibility with common word processors. The package also contains a few text formatting functions that help outputting text compatible with HTML/LaTeX.",
+ "License": "GPL (>= 3)",
+ "URL": "https://gforge.se/packages/",
+ "BugReports": "https://github.com/gforge/htmlTable/issues",
+ "Biarch": "yes",
+ "Depends": [
+ "R (>= 4.1)"
+ ],
+ "Imports": [
+ "stringr",
+ "knitr (>= 1.6)",
+ "magrittr (>= 1.5)",
+ "methods",
"checkmate",
- "htmltools",
"htmlwidgets",
- "knitr",
- "magrittr",
- "methods",
- "rstudioapi",
- "stringr"
+ "htmltools",
+ "rstudioapi (>= 0.6)"
+ ],
+ "Suggests": [
+ "testthat",
+ "XML",
+ "xml2",
+ "Hmisc",
+ "rmarkdown",
+ "chron",
+ "lubridate",
+ "tibble",
+ "purrr",
+ "tidyselect",
+ "glue",
+ "rlang",
+ "tidyr (>= 0.7.2)",
+ "dplyr (>= 0.7.4)"
],
- "Hash": "ca027d8771f2c039aed82f00a81e725b"
+ "Encoding": "UTF-8",
+ "NeedsCompilation": "no",
+ "VignetteBuilder": "knitr",
+ "RoxygenNote": "7.2.2",
+ "Author": "Max Gordon [aut, cre], Stephen Gragg [aut], Peter Konings [aut]",
+ "Repository": "CRAN"
},
"htmltools": {
"Package": "htmltools",
"Version": "0.5.8.1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Type": "Package",
+ "Title": "Tools for HTML",
+ "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Tools for HTML generation and output.",
+ "License": "GPL (>= 2)",
+ "URL": "https://github.com/rstudio/htmltools, https://rstudio.github.io/htmltools/",
+ "BugReports": "https://github.com/rstudio/htmltools/issues",
+ "Depends": [
+ "R (>= 2.14.1)"
+ ],
+ "Imports": [
"base64enc",
"digest",
- "fastmap",
+ "fastmap (>= 1.1.0)",
"grDevices",
- "rlang",
+ "rlang (>= 1.0.0)",
"utils"
],
- "Hash": "81d371a9cc60640e74e4ab6ac46dcedc"
+ "Suggests": [
+ "Cairo",
+ "markdown",
+ "ragg",
+ "shiny",
+ "testthat",
+ "withr"
+ ],
+ "Enhances": [
+ "knitr"
+ ],
+ "Config/Needs/check": "knitr",
+ "Config/Needs/website": "rstudio/quillt, bench",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.1",
+ "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R' 'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R' 'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R' 'template.R'",
+ "NeedsCompilation": "yes",
+ "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Carson Sievert <carson@posit.co>",
+ "Repository": "CRAN"
},
"htmlwidgets": {
"Package": "htmlwidgets",
"Version": "1.6.4",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
+ "Type": "Package",
+ "Title": "HTML Widgets for R",
+ "Authors@R": "c( person(\"Ramnath\", \"Vaidyanathan\", role = c(\"aut\", \"cph\")), person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Kenton\", \"Russell\", role = c(\"aut\", \"cph\")), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://github.com/ramnathv/htmlwidgets",
+ "BugReports": "https://github.com/ramnathv/htmlwidgets/issues",
+ "Imports": [
"grDevices",
- "htmltools",
- "jsonlite",
- "knitr",
+ "htmltools (>= 0.5.7)",
+ "jsonlite (>= 0.9.16)",
+ "knitr (>= 1.8)",
"rmarkdown",
"yaml"
],
- "Hash": "04291cc45198225444a397606810ac37"
+ "Suggests": [
+ "testthat"
+ ],
+ "Enhances": [
+ "shiny (>= 1.1)"
+ ],
+ "VignetteBuilder": "knitr",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.2.3",
+ "NeedsCompilation": "no",
+ "Author": "Ramnath Vaidyanathan [aut, cph], Yihui Xie [aut], JJ Allaire [aut], Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Kenton Russell [aut, cph], Ellis Hughes [ctb], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Carson Sievert <carson@posit.co>",
+ "Repository": "CRAN"
},
"intervals": {
"Package": "intervals",
"Version": "0.15.5",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Type": "Package",
+ "Title": "Tools for Working with Points and Intervals",
+ "Authors@R": "c(person(given = \"Richard\", family = \"Bourgon\", role = \"aut\", email = \"bourgon.richard@gene.com\"), person(given = \"Edzer\", family = \"Pebesma\", role = \"cre\", email = \"edzer.pebesma@uni-muenster.de\"))",
+ "Depends": [
+ "R (>= 2.9.0)"
+ ],
+ "Imports": [
+ "utils",
"graphics",
- "methods",
- "utils"
+ "methods"
],
- "Hash": "da1fd6a5634e370ad0ef99a1aa2b17cb"
+ "Description": "Tools for working with and comparing sets of points and intervals.",
+ "License": "Artistic-2.0",
+ "LazyLoad": "yes",
+ "URL": "https://github.com/edzer/intervals",
+ "NeedsCompilation": "yes",
+ "Author": "Richard Bourgon [aut], Edzer Pebesma [cre]",
+ "Maintainer": "Edzer Pebesma <edzer.pebesma@uni-muenster.de>",
+ "Repository": "CRAN"
},
"isoband": {
"Package": "isoband",
"Version": "0.2.7",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
+ "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-5147-4711\")) )",
+ "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://isoband.r-lib.org",
+ "BugReports": "https://github.com/r-lib/isoband/issues",
+ "Imports": [
"grid",
"utils"
],
- "Hash": "0080607b4a1a7b28979aecef976d8bc2"
+ "Suggests": [
+ "covr",
+ "ggplot2",
+ "knitr",
+ "magick",
+ "microbenchmark",
+ "rmarkdown",
+ "sf",
+ "testthat",
+ "xml2"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.2.3",
+ "SystemRequirements": "C++11",
+ "NeedsCompilation": "yes",
+ "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Claus O. Wilke [aut] (Original author, <https://orcid.org/0000-0002-7470-9261>), Thomas Lin Pedersen [aut] (<https://orcid.org/0000-0002-5147-4711>)",
+ "Maintainer": "Hadley Wickham <hadley@posit.co>",
+ "Repository": "CRAN"
},
"jquerylib": {
"Package": "jquerylib",
"Version": "0.1.4",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
+ "Title": "Obtain 'jQuery' as an HTML Dependency Object",
+ "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )",
+ "Description": "Obtain any major version of 'jQuery' (<https://code.jquery.com/>) and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.",
+ "License": "MIT + file LICENSE",
+ "Encoding": "UTF-8",
+ "Config/testthat/edition": "3",
+ "RoxygenNote": "7.0.2",
+ "Imports": [
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],
- "Hash": "5aab57a3bd297eee1c1d862735972182"
+ "Suggests": [
+ "testthat"
+ ],
+ "NeedsCompilation": "no",
+ "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)",
+ "Maintainer": "Carson Sievert <carson@rstudio.com>",
+ "Repository": "CRAN"
},
"jsonlite": {
"Package": "jsonlite",
- "Version": "1.8.9",
+ "Version": "1.9.0",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
+ "Title": "A Simple and Robust JSON Parser and Generator for R",
+ "License": "MIT + file LICENSE",
+ "Depends": [
"methods"
],
- "Hash": "4e993b65c2c3ffbffce7bb3e2c6f832b"
+ "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))",
+ "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805",
+ "BugReports": "https://github.com/jeroen/jsonlite/issues",
+ "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
+ "VignetteBuilder": "knitr, R.rsp",
+ "Description": "A reasonably fast JSON parser and generator, optimized for statistical data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.",
+ "Suggests": [
+ "httr",
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+ ],
+ "RoxygenNote": "7.2.3",
+ "Encoding": "UTF-8",
+ "NeedsCompilation": "yes",
+ "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)",
+ "Repository": "CRAN"
},
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"Package": "knitr",
- "Version": "1.48",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "evaluate",
- "highr",
+ "Version": "1.49",
+ "Source": "Repository",
+ "Type": "Package",
+ "Title": "A General-Purpose Package for Dynamic Report Generation in R",
+ "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", 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+ "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.",
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],
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+ "tikzDevice (>= 0.10)",
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+ "rstudioapi",
+ "svglite"
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+ "URL": "https://yihui.org/knitr/",
+ "BugReports": "https://github.com/yihui/knitr/issues",
+ "Encoding": "UTF-8",
+ "VignetteBuilder": "litedown, knitr",
+ "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).",
+ "Collate": "'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R' 'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'",
+ "RoxygenNote": "7.3.2",
+ "NeedsCompilation": "no",
+ "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (<https://orcid.org/0000-0002-9101-3362>), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (<https://orcid.org/0000-0003-1413-3974>), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Yihui Xie <xie@yihui.name>",
+ "Repository": "CRAN"
},
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"Package": "labeling",
"Version": "0.4.3",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "graphics",
- "stats"
+ "Type": "Package",
+ "Title": "Axis Labeling",
+ "Date": "2023-08-29",
+ "Author": "Justin Talbot,",
+ "Maintainer": "Nuno Sempere <nuno.semperelh@gmail.com>",
+ "Description": "Functions which provide a range of axis labeling algorithms.",
+ "License": "MIT + file LICENSE | Unlimited",
+ "Collate": "'labeling.R'",
+ "NeedsCompilation": "no",
+ "Imports": [
+ "stats",
+ "graphics"
],
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- "Source": "Repository",
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+ "Version": "1.4.1",
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+ "Type": "Package",
+ "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops",
+ "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"), person(\"Charlie\", \"Gao\", role = c(\"aut\"), email = \"charlie.gao@shikokuchuo.net\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(family = \"Posit Software, PBC\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )",
+ "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.",
+ "URL": "https://r-lib.github.io/later/, https://github.com/r-lib/later",
+ "BugReports": "https://github.com/r-lib/later/issues",
+ "License": "MIT + file LICENSE",
+ "Imports": [
+ "Rcpp (>= 0.12.9)",
"rlang"
],
- "Hash": "a3e051d405326b8b0012377434c62b37"
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+ ],
+ "VignetteBuilder": "knitr",
+ "Encoding": "UTF-8",
+ "NeedsCompilation": "yes",
+ "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Charlie Gao [aut] (<https://orcid.org/0000-0002-0750-061X>), Posit Software, PBC [cph], Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)",
+ "Maintainer": "Winston Chang <winston@posit.co>",
+ "Repository": "CRAN"
},
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"Package": "lattice",
"Version": "0.22-6",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Date": "2024-03-20",
+ "Priority": "recommended",
+ "Title": "Trellis Graphics for R",
+ "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )",
+ "Description": "A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.",
+ "Depends": [
+ "R (>= 4.0.0)"
+ ],
+ "Suggests": [
+ "KernSmooth",
+ "MASS",
+ "latticeExtra",
+ "colorspace"
+ ],
+ "Imports": [
+ "grid",
"grDevices",
"graphics",
- "grid",
"stats",
"utils"
],
- "Hash": "cc5ac1ba4c238c7ca9fa6a87ca11a7e2"
+ "Enhances": [
+ "chron",
+ "zoo"
+ ],
+ "LazyLoad": "yes",
+ "LazyData": "yes",
+ "License": "GPL (>= 2)",
+ "URL": "https://lattice.r-forge.r-project.org/",
+ "BugReports": "https://github.com/deepayan/lattice/issues",
+ "NeedsCompilation": "yes",
+ "Author": "Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)",
+ "Maintainer": "Deepayan Sarkar <deepayan.sarkar@r-project.org>",
+ "Repository": "CRAN"
},
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"Version": "1.0.4",
"Source": "Repository",
- "Repository": "CRAN",
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- "R",
- "cli",
+ "Title": "Manage the Life Cycle of your Package Functions",
+ "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Manage the life cycle of your exported functions with shared conventions, documentation badges, and user-friendly deprecation warnings.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://lifecycle.r-lib.org/, https://github.com/r-lib/lifecycle",
+ "BugReports": "https://github.com/r-lib/lifecycle/issues",
+ "Depends": [
+ "R (>= 3.6)"
+ ],
+ "Imports": [
+ "cli (>= 3.4.0)",
"glue",
- "rlang"
+ "rlang (>= 1.1.0)"
],
- "Hash": "b8552d117e1b808b09a832f589b79035"
+ "Suggests": [
+ "covr",
+ "crayon",
+ "knitr",
+ "lintr",
+ "rmarkdown",
+ "testthat (>= 3.0.1)",
+ "tibble",
+ "tidyverse",
+ "tools",
+ "vctrs",
+ "withr"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate, usethis",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
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+ "NeedsCompilation": "no",
+ "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Lionel Henry <lionel@posit.co>",
+ "Repository": "CRAN"
},
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- "Repository": "CRAN",
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- "generics",
+ "Version": "1.9.4",
+ "Source": "Repository",
+ "Type": "Package",
+ "Title": "Make Dealing with Dates a Little Easier",
+ "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )",
+ "Maintainer": "Vitalie Spinu <spinuvit@gmail.com>",
+ "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.",
+ "License": "GPL (>= 2)",
+ "URL": "https://lubridate.tidyverse.org, https://github.com/tidyverse/lubridate",
+ "BugReports": "https://github.com/tidyverse/lubridate/issues",
+ "Depends": [
"methods",
- "timechange"
+ "R (>= 3.2)"
+ ],
+ "Imports": [
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+ "timechange (>= 0.3.0)"
+ ],
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+ "knitr",
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+ "vctrs (>= 0.6.5)"
],
- "Hash": "680ad542fbcf801442c83a6ac5a2126c"
+ "Enhances": [
+ "chron",
+ "data.table",
+ "timeDate",
+ "tis",
+ "zoo"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
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+ "RoxygenNote": "7.2.3",
+ "SystemRequirements": "C++11, A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.",
+ "Collate": "'Dates.r' 'POSIXt.r' 'util.r' 'parse.r' 'timespans.r' 'intervals.r' 'difftimes.r' 'durations.r' 'periods.r' 'accessors-date.R' 'accessors-day.r' 'accessors-dst.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-month.r' 'accessors-quarter.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'am-pm.r' 'time-zones.r' 'numeric.r' 'coercion.r' 'constants.r' 'cyclic_encoding.r' 'data.r' 'decimal-dates.r' 'deprecated.r' 'format_ISO8601.r' 'guess.r' 'hidden.r' 'instants.r' 'leap-years.r' 'ops-addition.r' 'ops-compare.r' 'ops-division.r' 'ops-integer-division.r' 'ops-m+.r' 'ops-modulo.r' 'ops-multiplication.r' 'ops-subtraction.r' 'package.r' 'pretty.r' 'round.r' 'stamp.r' 'tzdir.R' 'update.r' 'vctrs.R' 'zzz.R'",
+ "NeedsCompilation": "yes",
+ "Author": "Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Davis Vaughan [ctb], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]",
+ "Repository": "CRAN"
},
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"Package": "magrittr",
"Version": "2.0.3",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R"
- ],
- "Hash": "7ce2733a9826b3aeb1775d56fd305472"
+ "Type": "Package",
+ "Title": "A Forward-Pipe Operator for R",
+ "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, \"Ceci n'est pas un pipe.\"",
+ "License": "MIT + file LICENSE",
+ "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr",
+ "BugReports": "https://github.com/tidyverse/magrittr/issues",
+ "Depends": [
+ "R (>= 3.4.0)"
+ ],
+ "Suggests": [
+ "covr",
+ "knitr",
+ "rlang",
+ "rmarkdown",
+ "testthat"
+ ],
+ "VignetteBuilder": "knitr",
+ "ByteCompile": "Yes",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.1.2",
+ "NeedsCompilation": "yes",
+ "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], RStudio [cph, fnd]",
+ "Maintainer": "Lionel Henry <lionel@rstudio.com>",
+ "Repository": "CRAN"
},
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"Version": "2.0.1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "cachem",
- "rlang"
- ],
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+ "Description": "Cache the results of a function so that when you call it again with the same arguments it returns the previously computed value.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise",
+ "BugReports": "https://github.com/r-lib/memoise/issues",
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+ ],
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+ "Author": "Simon Wood <simon.wood@r-project.org>",
+ "Maintainer": "Simon Wood <simon.wood@r-project.org>",
+ "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation",
+ "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) <doi:10.1201/9781315370279> for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.",
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+ "nlme (>= 3.1-64)"
+ ],
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"stats",
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+ "Matrix",
+ "splines",
"utils"
],
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+ "Repository": "CRAN"
},
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+ "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )",
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+ "Imports": [
"tools"
],
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+ "URL": "https://github.com/yihui/mime",
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"Version": "0.5.1",
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+ "Title": "Utilities for Using Munsell Colours",
+ "Author": "Charlotte Wickham <cwickham@gmail.com>",
+ "Maintainer": "Charlotte Wickham <cwickham@gmail.com>",
+ "Description": "Provides easy access to, and manipulation of, the Munsell colours. Provides a mapping between Munsell's original notation (e.g. \"5R 5/10\") and hexadecimal strings suitable for use directly in R graphics. Also provides utilities to explore slices through the Munsell colour tree, to transform Munsell colours and display colour palettes.",
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+ "testthat"
+ ],
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"methods"
],
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+ "Version": "3.1-167",
+ "Source": "Repository",
+ "Date": "2025-01-27",
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+ "Title": "Linear and Nonlinear Mixed Effects Models",
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+ "Contact": "see 'MailingList'",
+ "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.",
+ "Depends": [
+ "R (>= 3.6.0)"
+ ],
+ "Imports": [
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"stats",
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],
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+ "Encoding": "UTF-8",
+ "License": "GPL (>= 2)",
+ "BugReports": "https://bugs.r-project.org",
+ "MailingList": "R-help@r-project.org",
+ "URL": "https://svn.r-project.org/R-packages/trunk/nlme/",
+ "NeedsCompilation": "yes",
+ "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)",
+ "Maintainer": "R Core Team <R-core@R-project.org>",
+ "Repository": "CRAN"
},
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- "Version": "7.3-19",
+ "Version": "7.3-20",
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- "Repository": "CRAN",
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+ "Priority": "recommended",
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+ "R (>= 3.0.0)",
"stats",
"utils"
],
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+ "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))",
+ "Description": "Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.",
+ "Title": "Feed-Forward Neural Networks and Multinomial Log-Linear Models",
+ "ByteCompile": "yes",
+ "License": "GPL-2 | GPL-3",
+ "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
+ "NeedsCompilation": "yes",
+ "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]",
+ "Maintainer": "Brian Ripley <Brian.Ripley@R-project.org>",
+ "Repository": "CRAN"
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- "Version": "1.9.0",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
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+ "Version": "1.10.1",
+ "Source": "Repository",
+ "Title": "Coloured Formatting for Columns",
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+ "Description": "Provides 'pillar' and 'colonnade' generics designed for formatting columns of data using the full range of colours provided by modern terminals.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar",
+ "BugReports": "https://github.com/r-lib/pillar/issues",
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+ "cli (>= 2.3.0)",
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+ "rlang (>= 1.0.2)",
+ "utf8 (>= 1.1.0)",
"utils",
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+ "vctrs (>= 0.5.0)"
+ ],
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+ "DBI",
+ "debugme",
+ "DiagrammeR",
+ "dplyr",
+ "formattable",
+ "ggplot2",
+ "knitr",
+ "lubridate",
+ "nanotime",
+ "nycflights13",
+ "palmerpenguins",
+ "rmarkdown",
+ "scales",
+ "stringi",
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+ "testthat (>= 3.1.1)",
+ "tibble",
+ "units (>= 0.7.2)",
+ "vdiffr",
+ "withr"
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+ "Config/autostyle/scope": "line_breaks",
+ "Config/autostyle/strict": "true",
+ "Config/gha/extra-packages": "DiagrammeR=?ignore-before-r=3.5.0",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "NeedsCompilation": "no",
+ "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], RStudio [cph]",
+ "Maintainer": "Kirill Müller <kirill@cynkra.com>",
+ "Repository": "CRAN"
},
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"Package": "pkgconfig",
"Version": "2.0.3",
"Source": "Repository",
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- "Requirements": [
+ "Title": "Private Configuration for 'R' Packages",
+ "Author": "Gábor Csárdi",
+ "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
+ "Description": "Set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.",
+ "License": "MIT + file LICENSE",
+ "LazyData": "true",
+ "Imports": [
"utils"
],
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+ "URL": "https://github.com/r-lib/pkgconfig#readme",
+ "BugReports": "https://github.com/r-lib/pkgconfig/issues",
+ "Encoding": "UTF-8",
+ "NeedsCompilation": "no",
+ "Repository": "CRAN"
},
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"Version": "0.2.0",
"Source": "Repository",
- "Repository": "CRAN",
- "Hash": "09eb987710984fc2905c7129c7d85e65"
+ "Title": "The 'plog' C++ Logging Library",
+ "Date": "2018-03-24",
+ "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"krlmlr+r@mailbox.org\"), person(\"Sergey\", \"Podobry\", role = \"cph\", comment = \"Author of the bundled plog library\"))",
+ "Description": "A simple header-only logging library for C++. Add 'LinkingTo: plogr' to 'DESCRIPTION', and '#include <plogr.h>' in your C++ modules to use it.",
+ "Suggests": [
+ "Rcpp"
+ ],
+ "License": "MIT + file LICENSE",
+ "Encoding": "UTF-8",
+ "LazyData": "true",
+ "URL": "https://github.com/krlmlr/plogr#readme",
+ "BugReports": "https://github.com/krlmlr/plogr/issues",
+ "RoxygenNote": "6.0.1.9000",
+ "NeedsCompilation": "no",
+ "Author": "Kirill Müller [aut, cre], Sergey Podobry [cph] (Author of the bundled plog library)",
+ "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
+ "Repository": "CRAN"
},
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"Package": "plyr",
"Version": "1.8.9",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
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+ "Title": "Tools for Splitting, Applying and Combining Data",
+ "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"))",
+ "Description": "A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.",
+ "License": "MIT + file LICENSE",
+ "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr",
+ "BugReports": "https://github.com/hadley/plyr/issues",
+ "Depends": [
+ "R (>= 3.1.0)"
+ ],
+ "Imports": [
+ "Rcpp (>= 0.11.0)"
+ ],
+ "Suggests": [
+ "abind",
+ "covr",
+ "doParallel",
+ "foreach",
+ "iterators",
+ "itertools",
+ "tcltk",
+ "testthat"
+ ],
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],
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+ "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
+ "Repository": "CRAN"
},
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"Package": "pool",
- "Version": "1.0.3",
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"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "DBI",
- "R",
- "R6",
- "later",
+ "Type": "Package",
+ "Title": "Object Pooling",
+ "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Enables the creation of object pools, which make it less computationally expensive to fetch a new object. Currently the only supported pooled objects are 'DBI' connections.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://github.com/rstudio/pool, https://rstudio.github.io/pool/",
+ "BugReports": "https://github.com/rstudio/pool/issues",
+ "Depends": [
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- "rlang"
+ "R (>= 3.6.0)"
+ ],
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+ "later (>= 1.0.0)",
+ "R6",
+ "rlang (>= 1.0.0)"
],
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+ "dplyr",
+ "knitr",
+ "rmarkdown",
+ "RSQLite",
+ "shiny",
+ "testthat (>= 3.0.0)",
+ "tibble"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
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+ "NeedsCompilation": "no",
+ "Author": "Joe Cheng [aut], Barbara Borges [aut], Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Hadley Wickham <hadley@posit.co>",
+ "Repository": "CRAN"
},
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"Version": "0.3.3",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
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+ "Type": "Package",
+ "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs",
+ "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = c(\"trl\", \"cre\", \"cph\"), email = \"hadley@rstudio.com\"), person(given = \"RStudio\", role = \"cph\"), person(given = \"Sridhar\", family = \"Ratnakumar\", role = \"aut\"), person(given = \"Trent\", family = \"Mick\", role = \"aut\"), person(given = \"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(given = \"Eddy\", family = \"Petrisor\", role = \"ctb\"), person(given = \"Trevor\", family = \"Davis\", role = c(\"trl\", \"aut\")), person(given = \"Gabor\", family = \"Csardi\", role = \"ctb\"), person(given = \"Gregory\", family = \"Jefferis\", role = \"ctb\"))",
+ "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' (<https://github.com/ActiveState/appdirs>) to R.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs",
+ "BugReports": "https://github.com/r-lib/rappdirs/issues",
+ "Depends": [
+ "R (>= 3.2)"
+ ],
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+ "testthat (>= 3.0.0)",
+ "covr",
+ "withr"
],
- "Hash": "5e3c5dc0b071b21fa128676560dbe94d"
+ "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, RStudio. See file LICENSE for details.",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.1.1",
+ "Config/testthat/edition": "3",
+ "NeedsCompilation": "yes",
+ "Author": "Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]",
+ "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
+ "Repository": "CRAN"
},
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"Package": "renv",
- "Version": "1.0.9",
- "Source": "Repository",
- "Repository": "CRAN",
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+ "Source": "Repository",
+ "Type": "Package",
+ "Title": "Project Environments",
+ "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@rstudio.com\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://rstudio.github.io/renv/, https://github.com/rstudio/renv",
+ "BugReports": "https://github.com/rstudio/renv/issues",
+ "Imports": [
"utils"
],
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+ "cli",
+ "compiler",
+ "covr",
+ "cpp11",
+ "devtools",
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+ "jsonlite",
+ "jsonvalidate",
+ "knitr",
+ "miniUI",
+ "modules",
+ "packrat",
+ "pak",
+ "R6",
+ "remotes",
+ "reticulate",
+ "rmarkdown",
+ "rstudioapi",
+ "shiny",
+ "testthat",
+ "uuid",
+ "waldo",
+ "yaml",
+ "webfakes"
+ ],
+ "Encoding": "UTF-8",
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+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Config/testthat/parallel": "true",
+ "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes",
+ "NeedsCompilation": "no",
+ "Author": "Kevin Ushey [aut, cre] (<https://orcid.org/0000-0003-2880-7407>), Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Kevin Ushey <kevin@rstudio.com>",
+ "Repository": "CRAN"
},
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"Package": "reshape2",
"Version": "1.4.4",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
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+ "Title": "Flexibly Reshape Data: A Reboot of the Reshape Package",
+ "Author": "Hadley Wickham <h.wickham@gmail.com>",
+ "Maintainer": "Hadley Wickham <h.wickham@gmail.com>",
+ "Description": "Flexibly restructure and aggregate data using just two functions: melt and 'dcast' (or 'acast').",
+ "License": "MIT + file LICENSE",
+ "URL": "https://github.com/hadley/reshape",
+ "BugReports": "https://github.com/hadley/reshape/issues",
+ "Depends": [
+ "R (>= 3.1)"
+ ],
+ "Imports": [
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"Rcpp",
- "plyr",
"stringr"
],
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+ "lattice",
+ "testthat (>= 0.8.0)"
+ ],
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+ "NeedsCompilation": "yes",
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},
"rlang": {
"Package": "rlang",
- "Version": "1.1.4",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Version": "1.1.5",
+ "Source": "Repository",
+ "Title": "Functions for Base Types and Core R and 'Tidyverse' Features",
+ "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.",
+ "Authors@R": "c( person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"), person(given = \"mikefc\", email = \"mikefc@coolbutuseless.com\", role = \"cph\", comment = \"Hash implementation based on Mike's xxhashlite\"), person(given = \"Yann\", family = \"Collet\", role = \"cph\", comment = \"Author of the embedded xxHash library\"), person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "License": "MIT + file LICENSE",
+ "ByteCompile": "true",
+ "Biarch": "true",
+ "Depends": [
+ "R (>= 3.5.0)"
+ ],
+ "Imports": [
"utils"
],
- "Hash": "3eec01f8b1dee337674b2e34ab1f9bc1"
+ "Suggests": [
+ "cli (>= 3.1.0)",
+ "covr",
+ "crayon",
+ "fs",
+ "glue",
+ "knitr",
+ "magrittr",
+ "methods",
+ "pillar",
+ "rmarkdown",
+ "stats",
+ "testthat (>= 3.0.0)",
+ "tibble",
+ "usethis",
+ "vctrs (>= 0.2.3)",
+ "withr"
+ ],
+ "Enhances": [
+ "winch"
+ ],
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang",
+ "BugReports": "https://github.com/r-lib/rlang/issues",
+ "Config/testthat/edition": "3",
+ "Config/Needs/website": "dplyr, tidyverse/tidytemplate",
+ "NeedsCompilation": "yes",
+ "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], mikefc [cph] (Hash implementation based on Mike's xxhashlite), Yann Collet [cph] (Author of the embedded xxHash library), Posit, PBC [cph, fnd]",
+ "Maintainer": "Lionel Henry <lionel@posit.co>",
+ "Repository": "CRAN"
},
"rmarkdown": {
"Package": "rmarkdown",
- "Version": "2.28",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "bslib",
- "evaluate",
- "fontawesome",
- "htmltools",
+ "Version": "2.29",
+ "Source": "Repository",
+ "Type": "Package",
+ "Title": "Dynamic Documents for R",
+ "Authors@R": "c( person(\"JJ\", \"Allaire\", , \"jj@posit.co\", role = \"aut\"), person(\"Yihui\", \"Xie\", , \"xie@yihui.name\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Jonathan\", \"McPherson\", , \"jonathan@posit.co\", role = \"aut\"), person(\"Javier\", \"Luraschi\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevin@posit.co\", role = \"aut\"), person(\"Aron\", \"Atkins\", , \"aron@posit.co\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Andrew\", \"Dunning\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0464-5036\")), person(\"Atsushi\", \"Yasumoto\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-8335-495X\", cph = \"Number sections Lua filter\")), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Carson\", \"Sievert\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Devon\", \"Ryan\", , \"dpryan79@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Jeff\", \"Allen\", , \"jeff@posit.co\", role = \"ctb\"), person(\"JooYoung\", \"Seo\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Malcolm\", \"Barrett\", role = \"ctb\"), person(\"Rob\", \"Hyndman\", , \"Rob.Hyndman@monash.edu\", role = \"ctb\"), person(\"Romain\", \"Lesur\", role = \"ctb\"), person(\"Roy\", \"Storey\", role = \"ctb\"), person(\"Ruben\", \"Arslan\", , \"ruben.arslan@uni-goettingen.de\", role = \"ctb\"), person(\"Sergio\", \"Oller\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Alexander\", \"Farkas\", role = c(\"ctb\", \"cph\"), comment = \"html5shiv library\"), person(\"Scott\", \"Jehl\", role = c(\"ctb\", \"cph\"), comment = \"Respond.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(\"Greg\", \"Franko\", role = c(\"ctb\", \"cph\"), comment = \"tocify library\"), person(\"John\", \"MacFarlane\", role = c(\"ctb\", \"cph\"), comment = \"Pandoc templates\"), person(, \"Google, Inc.\", role = c(\"ctb\", \"cph\"), comment = \"ioslides library\"), person(\"Dave\", \"Raggett\", role = \"ctb\", comment = \"slidy library\"), person(, \"W3C\", role = \"cph\", comment = \"slidy library\"), person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"), comment = \"Font-Awesome\"), person(\"Ben\", \"Sperry\", role = \"ctb\", comment = \"Ionicons\"), person(, \"Drifty\", role = \"cph\", comment = \"Ionicons\"), person(\"Aidan\", \"Lister\", role = c(\"ctb\", \"cph\"), comment = \"jQuery StickyTabs\"), person(\"Benct Philip\", \"Jonsson\", role = c(\"ctb\", \"cph\"), comment = \"pagebreak Lua filter\"), person(\"Albert\", \"Krewinkel\", role = c(\"ctb\", \"cph\"), comment = \"pagebreak Lua filter\") )",
+ "Description": "Convert R Markdown documents into a variety of formats.",
+ "License": "GPL-3",
+ "URL": "https://github.com/rstudio/rmarkdown, https://pkgs.rstudio.com/rmarkdown/",
+ "BugReports": "https://github.com/rstudio/rmarkdown/issues",
+ "Depends": [
+ "R (>= 3.0)"
+ ],
+ "Imports": [
+ "bslib (>= 0.2.5.1)",
+ "evaluate (>= 0.13)",
+ "fontawesome (>= 0.5.0)",
+ "htmltools (>= 0.5.1)",
"jquerylib",
"jsonlite",
- "knitr",
+ "knitr (>= 1.43)",
"methods",
- "tinytex",
+ "tinytex (>= 0.31)",
"tools",
"utils",
- "xfun",
- "yaml"
+ "xfun (>= 0.36)",
+ "yaml (>= 2.1.19)"
],
- "Hash": "062470668513dcda416927085ee9bdc7"
+ "Suggests": [
+ "digest",
+ "dygraphs",
+ "fs",
+ "rsconnect",
+ "downlit (>= 0.4.0)",
+ "katex (>= 1.4.0)",
+ "sass (>= 0.4.0)",
+ "shiny (>= 1.6.0)",
+ "testthat (>= 3.0.3)",
+ "tibble",
+ "vctrs",
+ "cleanrmd",
+ "withr (>= 2.4.2)",
+ "xml2"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "rstudio/quillt, pkgdown",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org",
+ "NeedsCompilation": "no",
+ "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Andrew Dunning [ctb] (<https://orcid.org/0000-0003-0464-5036>), Atsushi Yasumoto [ctb, cph] (<https://orcid.org/0000-0002-8335-495X>, Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (<https://orcid.org/0000-0002-4958-2844>), Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>), Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>), Jeff Allen [ctb], JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)",
+ "Maintainer": "Yihui Xie <xie@yihui.name>",
+ "Repository": "CRAN"
},
"rpart": {
"Package": "rpart",
- "Version": "4.1.23",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "grDevices",
+ "Version": "4.1.24",
+ "Source": "Repository",
+ "Priority": "recommended",
+ "Date": "2025-01-06",
+ "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"ripley@stats.ox.ac.uk\", comment = \"producer of the initial R port, maintainer 1999-2017\"))",
+ "Description": "Recursive partitioning for classification, regression and survival trees. An implementation of most of the functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.",
+ "Title": "Recursive Partitioning and Regression Trees",
+ "Depends": [
+ "R (>= 2.15.0)",
"graphics",
- "stats"
+ "stats",
+ "grDevices"
+ ],
+ "Suggests": [
+ "survival"
],
- "Hash": "b3d390424f41d04174cccf84d49676c2"
+ "License": "GPL-2 | GPL-3",
+ "LazyData": "yes",
+ "ByteCompile": "yes",
+ "NeedsCompilation": "yes",
+ "Author": "Terry Therneau [aut], Beth Atkinson [aut, cre], Brian Ripley [trl] (producer of the initial R port, maintainer 1999-2017)",
+ "Maintainer": "Beth Atkinson <atkinson@mayo.edu>",
+ "Repository": "CRAN",
+ "URL": "https://github.com/bethatkinson/rpart, https://cran.r-project.org/package=rpart",
+ "BugReports": "https://github.com/bethatkinson/rpart/issues"
},
"rstudioapi": {
"Package": "rstudioapi",
- "Version": "0.16.0",
- "Source": "Repository",
- "Repository": "CRAN",
- "Hash": "96710351d642b70e8f02ddeb237c46a7"
+ "Version": "0.17.1",
+ "Source": "Repository",
+ "Title": "Safely Access the RStudio API",
+ "Description": "Access the RStudio API (if available) and provide informative error messages when it's not.",
+ "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\"), person(\"JJ\", \"Allaire\", role = c(\"aut\"), email = \"jj@posit.co\"), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@posit.co\"), person(\"Gary\", \"Ritchie\", role = c(\"aut\"), email = \"gary@posit.co\"), person(family = \"RStudio\", role = \"cph\") )",
+ "Maintainer": "Kevin Ushey <kevin@rstudio.com>",
+ "License": "MIT + file LICENSE",
+ "URL": "https://rstudio.github.io/rstudioapi/, https://github.com/rstudio/rstudioapi",
+ "BugReports": "https://github.com/rstudio/rstudioapi/issues",
+ "RoxygenNote": "7.3.2",
+ "Suggests": [
+ "testthat",
+ "knitr",
+ "rmarkdown",
+ "clipr",
+ "covr"
+ ],
+ "VignetteBuilder": "knitr",
+ "Encoding": "UTF-8",
+ "NeedsCompilation": "no",
+ "Author": "Kevin Ushey [aut, cre], JJ Allaire [aut], Hadley Wickham [aut], Gary Ritchie [aut], RStudio [cph]",
+ "Repository": "CRAN"
},
"sass": {
"Package": "sass",
"Version": "0.4.9",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
+ "Type": "Package",
+ "Title": "Syntactically Awesome Style Sheets ('Sass')",
+ "Description": "An 'SCSS' compiler, powered by the 'LibSass' library. With this, R developers can use variables, inheritance, and functions to generate dynamic style sheets. The package uses the 'Sass CSS' extension language, which is stable, powerful, and CSS compatible.",
+ "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@rstudio.com\", \"aut\"), person(\"Timothy\", \"Mastny\", , \"tim.mastny@gmail.com\", \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Barret\", \"Schloerke\", , \"barret@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Carson\", \"Sievert\", , \"carson@rstudio.com\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Christophe\", \"Dervieux\", , \"cderv@rstudio.com\", c(\"ctb\"), comment = c(ORCID = \"0000-0003-4474-2498\")), person(family = \"RStudio\", role = c(\"cph\", \"fnd\")), person(family = \"Sass Open Source Foundation\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Greter\", \"Marcel\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Mifsud\", \"Michael\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Hampton\", \"Catlin\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Natalie\", \"Weizenbaum\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Chris\", \"Eppstein\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Adams\", \"Joseph\", role = c(\"ctb\", \"cph\"), comment = \"json.cpp\"), person(\"Trifunovic\", \"Nemanja\", role = c(\"ctb\", \"cph\"), comment = \"utf8.h\") )",
+ "License": "MIT + file LICENSE",
+ "URL": "https://rstudio.github.io/sass/, https://github.com/rstudio/sass",
+ "BugReports": "https://github.com/rstudio/sass/issues",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.1",
+ "SystemRequirements": "GNU make",
+ "Imports": [
+ "fs (>= 1.2.4)",
+ "rlang (>= 0.4.10)",
+ "htmltools (>= 0.5.1)",
"R6",
- "fs",
- "htmltools",
- "rappdirs",
- "rlang"
+ "rappdirs"
+ ],
+ "Suggests": [
+ "testthat",
+ "knitr",
+ "rmarkdown",
+ "withr",
+ "shiny",
+ "curl"
],
- "Hash": "d53dbfddf695303ea4ad66f86e99b95d"
+ "VignetteBuilder": "knitr",
+ "Config/testthat/edition": "3",
+ "NeedsCompilation": "yes",
+ "Author": "Joe Cheng [aut], Timothy Mastny [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), RStudio [cph, fnd], Sass Open Source Foundation [ctb, cph] (LibSass library), Greter Marcel [ctb, cph] (LibSass library), Mifsud Michael [ctb, cph] (LibSass library), Hampton Catlin [ctb, cph] (LibSass library), Natalie Weizenbaum [ctb, cph] (LibSass library), Chris Eppstein [ctb, cph] (LibSass library), Adams Joseph [ctb, cph] (json.cpp), Trifunovic Nemanja [ctb, cph] (utf8.h)",
+ "Maintainer": "Carson Sievert <carson@rstudio.com>",
+ "Repository": "CRAN"
},
"scales": {
"Package": "scales",
"Version": "1.3.0",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "R6",
- "RColorBrewer",
+ "Title": "Scale Functions for Visualization",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://scales.r-lib.org, https://github.com/r-lib/scales",
+ "BugReports": "https://github.com/r-lib/scales/issues",
+ "Depends": [
+ "R (>= 3.6)"
+ ],
+ "Imports": [
"cli",
- "farver",
+ "farver (>= 2.0.3)",
"glue",
"labeling",
"lifecycle",
- "munsell",
- "rlang",
+ "munsell (>= 0.5)",
+ "R6",
+ "RColorBrewer",
+ "rlang (>= 1.0.0)",
"viridisLite"
],
- "Hash": "c19df082ba346b0ffa6f833e92de34d1"
+ "Suggests": [
+ "bit64",
+ "covr",
+ "dichromat",
+ "ggplot2",
+ "hms (>= 0.5.0)",
+ "stringi",
+ "testthat (>= 3.0.0)"
+ ],
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
+ "LazyLoad": "yes",
+ "RoxygenNote": "7.2.3",
+ "NeedsCompilation": "yes",
+ "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit, PBC [cph, fnd]",
+ "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
+ "Repository": "CRAN"
},
"stacomirtools": {
"Package": "stacomirtools",
"Version": "0.6.0.1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "DBI",
+ "Date": "2022-04-28",
+ "Title": "Connection Class for Package stacomiR",
+ "Authors@R": "c( person(\"Cedric\", \"Briand\", role = c(\"aut\", \"cre\"), email = \"cedric.briand00@gmail.com\"), person(\"Marion\", \"Legrand\", role = \"aut\", email = \"tableau-salt-loire@logrami.fr\"), person(\"Beaulaton\", \"Laurent\", role = \"ctb\", email = \"laurent.beaulaton@ofb.gouv.fr\"))",
+ "Author": "Cedric Briand [aut, cre], Marion Legrand [aut], Beaulaton Laurent [ctb]",
+ "Maintainer": "Cedric Briand <cedric.briand00@gmail.com>",
+ "Description": "S4 class wrappers for the 'ODBC' and Pool DBI connection, also provides some utilities to paste small datasets to clipboard, rename columns. It is used by the package 'stacomiR' for connections to the database. Development versions of 'stacomiR' are available in R-forge.",
+ "License": "GPL (>= 2)",
+ "Collate": "'ConnectionODBC.R' 'RequeteODBC.R' 'RequeteODBCwhere.R' 'RequeteODBCwheredate.R' 'utilities.R' 'stacomirtools.R' 'stacomirtools-package.R''ConnectionDB.R' 'RequeteDB.R' 'RequeteDBwhere.R' 'RequeteDBwheredate.R' 'zzz.R'",
+ "LazyLoad": "yes",
+ "Depends": [
"RODBC",
- "RPostgres",
+ "DBI",
+ "pool"
+ ],
+ "Imports": [
"methods",
- "pool",
+ "xtable",
"utils",
- "xtable"
+ "RPostgres"
+ ],
+ "Suggests": [
+ "testthat",
+ "withr"
],
- "Hash": "2b32e7d7b518bc46946e3b020e682d7d"
+ "NeedsCompilation": "no",
+ "RoxygenNote": "7.1.2",
+ "Repository": "CRAN"
},
"stringi": {
"Package": "stringi",
"Version": "1.8.4",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "stats",
+ "Date": "2024-05-06",
+ "Title": "Fast and Portable Character String Processing Facilities",
+ "Description": "A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at <https://stringi.gagolewski.com/> and the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).",
+ "URL": "https://stringi.gagolewski.com/, https://github.com/gagolews/stringi, https://icu.unicode.org/",
+ "BugReports": "https://github.com/gagolews/stringi/issues",
+ "SystemRequirements": "ICU4C (>= 61, optional)",
+ "Type": "Package",
+ "Depends": [
+ "R (>= 3.4)"
+ ],
+ "Imports": [
"tools",
- "utils"
+ "utils",
+ "stats"
],
- "Hash": "39e1144fd75428983dc3f63aa53dfa91"
+ "Biarch": "TRUE",
+ "License": "file LICENSE",
+ "Author": "Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>), Bartek Tartanus [ctb], and others (stringi source code); Unicode, Inc. and others (ICU4C source code, Unicode Character Database)",
+ "Maintainer": "Marek Gagolewski <marek@gagolewski.com>",
+ "RoxygenNote": "7.2.3",
+ "Encoding": "UTF-8",
+ "NeedsCompilation": "yes",
+ "License_is_FOSS": "yes",
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},
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"Package": "stringr",
"Version": "1.5.1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
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+ "Title": "Simple, Consistent Wrappers for Common String Operations",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with \"NA\"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://stringr.tidyverse.org, https://github.com/tidyverse/stringr",
+ "BugReports": "https://github.com/tidyverse/stringr/issues",
+ "Depends": [
+ "R (>= 3.6)"
+ ],
+ "Imports": [
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- "glue",
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+ "glue (>= 1.6.1)",
+ "lifecycle (>= 1.0.3)",
"magrittr",
- "rlang",
- "stringi",
- "vctrs"
- ],
- "Hash": "960e2ae9e09656611e0b8214ad543207"
+ "rlang (>= 1.0.0)",
+ "stringi (>= 1.5.3)",
+ "vctrs (>= 0.4.0)"
+ ],
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+ "covr",
+ "dplyr",
+ "gt",
+ "htmltools",
+ "htmlwidgets",
+ "knitr",
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+ "tibble"
+ ],
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+ "Config/Needs/website": "tidyverse/tidytemplate",
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+ "Encoding": "UTF-8",
+ "LazyData": "true",
+ "RoxygenNote": "7.2.3",
+ "NeedsCompilation": "no",
+ "Author": "Hadley Wickham [aut, cre, cph], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Hadley Wickham <hadley@posit.co>",
+ "Repository": "CRAN"
},
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"Version": "3.2.1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "fansi",
- "lifecycle",
+ "Title": "Simple Data Frames",
+ "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Romain\", family = \"Francois\", role = \"ctb\", email = \"romain@r-enthusiasts.com\"), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\"), person(given = \"RStudio\", role = c(\"cph\", \"fnd\")))",
+ "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble",
+ "BugReports": "https://github.com/tidyverse/tibble/issues",
+ "Depends": [
+ "R (>= 3.4.0)"
+ ],
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+ "lifecycle (>= 1.0.0)",
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+ "pillar (>= 1.8.1)",
"pkgconfig",
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+ "rlang (>= 1.0.2)",
"utils",
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+ "vctrs (>= 0.4.2)"
],
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+ "bit64",
+ "blob",
+ "brio",
+ "callr",
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+ "crayon (>= 1.3.4)",
+ "DiagrammeR",
+ "dplyr",
+ "evaluate",
+ "formattable",
+ "ggplot2",
+ "here",
+ "hms",
+ "htmltools",
+ "knitr",
+ "lubridate",
+ "mockr",
+ "nycflights13",
+ "pkgbuild",
+ "pkgload",
+ "purrr",
+ "rmarkdown",
+ "stringi",
+ "testthat (>= 3.0.2)",
+ "tidyr",
+ "withr"
+ ],
+ "VignetteBuilder": "knitr",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.2.3",
+ "Config/testthat/edition": "3",
+ "Config/testthat/parallel": "true",
+ "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants",
+ "Config/autostyle/scope": "line_breaks",
+ "Config/autostyle/strict": "true",
+ "Config/autostyle/rmd": "false",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "NeedsCompilation": "yes",
+ "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]",
+ "Maintainer": "Kirill Müller <kirill@cynkra.com>",
+ "Repository": "CRAN"
},
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"Package": "tidyselect",
"Version": "1.2.1",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "cli",
- "glue",
- "lifecycle",
- "rlang",
- "vctrs",
+ "Title": "Select from a Set of Strings",
+ "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A backend for the selecting functions of the 'tidyverse'. It makes it easy to implement select-like functions in your own packages in a way that is consistent with other 'tidyverse' interfaces for selection.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect",
+ "BugReports": "https://github.com/r-lib/tidyselect/issues",
+ "Depends": [
+ "R (>= 3.4)"
+ ],
+ "Imports": [
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+ "glue (>= 1.3.0)",
+ "lifecycle (>= 1.0.3)",
+ "rlang (>= 1.0.4)",
+ "vctrs (>= 0.5.2)",
"withr"
],
- "Hash": "829f27b9c4919c16b593794a6344d6c0"
+ "Suggests": [
+ "covr",
+ "crayon",
+ "dplyr",
+ "knitr",
+ "magrittr",
+ "rmarkdown",
+ "stringr",
+ "testthat (>= 3.1.1)",
+ "tibble (>= 2.1.3)"
+ ],
+ "VignetteBuilder": "knitr",
+ "ByteCompile": "true",
+ "Config/testthat/edition": "3",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.0.9000",
+ "NeedsCompilation": "yes",
+ "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Lionel Henry <lionel@posit.co>",
+ "Repository": "CRAN"
},
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- "Requirements": [
- "R",
- "cpp11"
- ],
- "Hash": "c5f3c201b931cd6474d17d8700ccb1c8"
+ "Title": "Efficient Manipulation of Date-Times",
+ "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))",
+ "Description": "Efficient routines for manipulation of date-time objects while accounting for time-zones and daylight saving times. The package includes utilities for updating of date-time components (year, month, day etc.), modification of time-zones, rounding of date-times, period addition and subtraction etc. Parts of the 'CCTZ' source code, released under the Apache 2.0 License, are included in this package. See <https://github.com/google/cctz> for more details.",
+ "Depends": [
+ "R (>= 3.3)"
+ ],
+ "License": "GPL (>= 3)",
+ "Encoding": "UTF-8",
+ "LinkingTo": [
+ "cpp11 (>= 0.2.7)"
+ ],
+ "Suggests": [
+ "testthat (>= 0.7.1.99)",
+ "knitr"
+ ],
+ "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo) as well as a recent-enough C++11 compiler (such as g++-4.8 or later). On Windows the zoneinfo included with R is used.",
+ "BugReports": "https://github.com/vspinu/timechange/issues",
+ "URL": "https://github.com/vspinu/timechange/",
+ "RoxygenNote": "7.2.1",
+ "NeedsCompilation": "yes",
+ "Author": "Vitalie Spinu [aut, cre], Google Inc. [ctb, cph]",
+ "Maintainer": "Vitalie Spinu <spinuvit@gmail.com>",
+ "Repository": "CRAN"
},
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"Package": "tinytex",
- "Version": "0.53",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "xfun"
- ],
- "Hash": "9db859e8aabbb474293dde3097839420"
+ "Version": "0.55",
+ "Source": "Repository",
+ "Type": "Package",
+ "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents",
+ "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Devon\", \"Ryan\", role = \"ctb\", email = \"dpryan79@gmail.com\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Ethan\", \"Heinzen\", role = \"ctb\"), person(\"Fernando\", \"Cagua\", role = \"ctb\"), person() )",
+ "Description": "Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform, portable, and easy-to-maintain version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.",
+ "Imports": [
+ "xfun (>= 0.48)"
+ ],
+ "Suggests": [
+ "testit",
+ "rstudioapi"
+ ],
+ "License": "MIT + file LICENSE",
+ "URL": "https://github.com/rstudio/tinytex",
+ "BugReports": "https://github.com/rstudio/tinytex/issues",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "NeedsCompilation": "no",
+ "Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>), Ethan Heinzen [ctb], Fernando Cagua [ctb]",
+ "Maintainer": "Yihui Xie <xie@yihui.name>",
+ "Repository": "CRAN"
},
"utf8": {
"Package": "utf8",
"Version": "1.2.4",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R"
+ "Title": "Unicode Text Processing",
+ "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\"), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))",
+ "Description": "Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.",
+ "License": "Apache License (== 2.0) | file LICENSE",
+ "URL": "https://ptrckprry.com/r-utf8/, https://github.com/patperry/r-utf8",
+ "BugReports": "https://github.com/patperry/r-utf8/issues",
+ "Depends": [
+ "R (>= 2.10)"
],
- "Hash": "62b65c52671e6665f803ff02954446e9"
+ "Suggests": [
+ "cli",
+ "covr",
+ "knitr",
+ "rlang",
+ "rmarkdown",
+ "testthat (>= 3.0.0)",
+ "withr"
+ ],
+ "VignetteBuilder": "knitr, rmarkdown",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.2.3",
+ "NeedsCompilation": "yes",
+ "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre], Unicode, Inc. [cph, dtc] (Unicode Character Database)",
+ "Maintainer": "Kirill Müller <kirill@cynkra.com>",
+ "Repository": "CRAN"
},
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"Package": "vctrs",
"Version": "0.6.5",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "cli",
+ "Title": "Vector Helpers",
+ "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"data.table team\", role = \"cph\", comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "Defines new notions of prototype and size that are used to provide tools for consistent and well-founded type-coercion and size-recycling, and are in turn connected to ideas of type- and size-stability useful for analysing function interfaces.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://vctrs.r-lib.org/, https://github.com/r-lib/vctrs",
+ "BugReports": "https://github.com/r-lib/vctrs/issues",
+ "Depends": [
+ "R (>= 3.5.0)"
+ ],
+ "Imports": [
+ "cli (>= 3.4.0)",
"glue",
- "lifecycle",
- "rlang"
+ "lifecycle (>= 1.0.3)",
+ "rlang (>= 1.1.0)"
],
- "Hash": "c03fa420630029418f7e6da3667aac4a"
+ "Suggests": [
+ "bit64",
+ "covr",
+ "crayon",
+ "dplyr (>= 0.8.5)",
+ "generics",
+ "knitr",
+ "pillar (>= 1.4.4)",
+ "pkgdown (>= 2.0.1)",
+ "rmarkdown",
+ "testthat (>= 3.0.0)",
+ "tibble (>= 3.1.3)",
+ "waldo (>= 0.2.0)",
+ "withr",
+ "xml2",
+ "zeallot"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
+ "Language": "en-GB",
+ "RoxygenNote": "7.2.3",
+ "NeedsCompilation": "yes",
+ "Author": "Hadley Wickham [aut], Lionel Henry [aut], Davis Vaughan [aut, cre], data.table team [cph] (Radix sort based on data.table's forder() and their contribution to R's order()), Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Davis Vaughan <davis@posit.co>",
+ "Repository": "CRAN"
},
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"Package": "viridis",
"Version": "0.6.5",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "ggplot2",
- "gridExtra",
- "viridisLite"
- ],
- "Hash": "acd96d9fa70adeea4a5a1150609b9745"
+ "Type": "Package",
+ "Title": "Colorblind-Friendly Color Maps for R",
+ "Date": "2024-01-28",
+ "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )",
+ "Maintainer": "Simon Garnier <garnier@njit.edu>",
+ "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This package also contains 'ggplot2' bindings for discrete and continuous color and fill scales. A lean version of the package called 'viridisLite' that does not include the 'ggplot2' bindings can be found at <https://cran.r-project.org/package=viridisLite>.",
+ "License": "MIT + file LICENSE",
+ "Encoding": "UTF-8",
+ "Depends": [
+ "R (>= 2.10)",
+ "viridisLite (>= 0.4.0)"
+ ],
+ "Imports": [
+ "ggplot2 (>= 1.0.1)",
+ "gridExtra"
+ ],
+ "Suggests": [
+ "hexbin (>= 1.27.0)",
+ "scales",
+ "MASS",
+ "knitr",
+ "dichromat",
+ "colorspace",
+ "httr",
+ "mapproj",
+ "vdiffr",
+ "svglite (>= 1.2.0)",
+ "testthat",
+ "covr",
+ "rmarkdown",
+ "maps",
+ "terra"
+ ],
+ "LazyData": "true",
+ "VignetteBuilder": "knitr",
+ "URL": "https://sjmgarnier.github.io/viridis/, https://github.com/sjmgarnier/viridis/",
+ "BugReports": "https://github.com/sjmgarnier/viridis/issues",
+ "RoxygenNote": "7.3.1",
+ "NeedsCompilation": "no",
+ "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]",
+ "Repository": "CRAN"
},
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"Package": "viridisLite",
"Version": "0.4.2",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R"
- ],
- "Hash": "c826c7c4241b6fc89ff55aaea3fa7491"
+ "Type": "Package",
+ "Title": "Colorblind-Friendly Color Maps (Lite Version)",
+ "Date": "2023-05-02",
+ "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )",
+ "Maintainer": "Simon Garnier <garnier@njit.edu>",
+ "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at <https://cran.r-project.org/package=viridis>.",
+ "License": "MIT + file LICENSE",
+ "Encoding": "UTF-8",
+ "Depends": [
+ "R (>= 2.10)"
+ ],
+ "Suggests": [
+ "hexbin (>= 1.27.0)",
+ "ggplot2 (>= 1.0.1)",
+ "testthat",
+ "covr"
+ ],
+ "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/",
+ "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/",
+ "RoxygenNote": "7.2.3",
+ "NeedsCompilation": "no",
+ "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]",
+ "Repository": "CRAN"
},
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"Package": "withr",
- "Version": "3.0.1",
- "Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
- "grDevices",
- "graphics"
+ "Version": "3.0.2",
+ "Source": "Repository",
+ "Title": "Run Code 'With' Temporarily Modified Global State",
+ "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", , \"krlmlr+r@mailbox.org\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
+ "Description": "A set of functions to run code 'with' safely and temporarily modified global state. Many of these functions were originally a part of the 'devtools' package, this provides a simple package with limited dependencies to provide access to these functions.",
+ "License": "MIT + file LICENSE",
+ "URL": "https://withr.r-lib.org, https://github.com/r-lib/withr#readme",
+ "BugReports": "https://github.com/r-lib/withr/issues",
+ "Depends": [
+ "R (>= 3.6.0)"
+ ],
+ "Imports": [
+ "graphics",
+ "grDevices"
],
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+ "Suggests": [
+ "callr",
+ "DBI",
+ "knitr",
+ "methods",
+ "rlang",
+ "rmarkdown (>= 2.12)",
+ "RSQLite",
+ "testthat (>= 3.0.0)"
+ ],
+ "VignetteBuilder": "knitr",
+ "Config/Needs/website": "tidyverse/tidytemplate",
+ "Config/testthat/edition": "3",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "Collate": "'aaa.R' 'collate.R' 'connection.R' 'db.R' 'defer-exit.R' 'standalone-defer.R' 'defer.R' 'devices.R' 'local_.R' 'with_.R' 'dir.R' 'env.R' 'file.R' 'language.R' 'libpaths.R' 'locale.R' 'makevars.R' 'namespace.R' 'options.R' 'par.R' 'path.R' 'rng.R' 'seed.R' 'wrap.R' 'sink.R' 'tempfile.R' 'timezone.R' 'torture.R' 'utils.R' 'with.R'",
+ "NeedsCompilation": "no",
+ "Author": "Jim Hester [aut], Lionel Henry [aut, cre], Kirill Müller [aut], Kevin Ushey [aut], Hadley Wickham [aut], Winston Chang [aut], Jennifer Bryan [ctb], Richard Cotton [ctb], Posit Software, PBC [cph, fnd]",
+ "Maintainer": "Lionel Henry <lionel@posit.co>",
+ "Repository": "RSPM"
},
"xfun": {
"Package": "xfun",
- "Version": "0.47",
+ "Version": "0.51",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Type": "Package",
+ "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'",
+ "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )",
+ "Description": "Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.",
+ "Depends": [
+ "R (>= 3.2.0)"
+ ],
+ "Imports": [
"grDevices",
"stats",
"tools"
],
- "Hash": "36ab21660e2d095fef0d83f689e0477c"
+ "Suggests": [
+ "testit",
+ "parallel",
+ "codetools",
+ "methods",
+ "rstudioapi",
+ "tinytex (>= 0.30)",
+ "mime",
+ "litedown (>= 0.4)",
+ "commonmark",
+ "knitr (>= 1.47)",
+ "remotes",
+ "pak",
+ "rhub",
+ "renv",
+ "curl",
+ "xml2",
+ "jsonlite",
+ "magick",
+ "yaml",
+ "qs",
+ "rmarkdown"
+ ],
+ "License": "MIT + file LICENSE",
+ "URL": "https://github.com/yihui/xfun",
+ "BugReports": "https://github.com/yihui/xfun/issues",
+ "Encoding": "UTF-8",
+ "RoxygenNote": "7.3.2",
+ "VignetteBuilder": "litedown",
+ "NeedsCompilation": "yes",
+ "Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]",
+ "Maintainer": "Yihui Xie <xie@yihui.name>",
+ "Repository": "CRAN"
},
"xtable": {
"Package": "xtable",
"Version": "1.8-4",
"Source": "Repository",
- "Repository": "CRAN",
- "Requirements": [
- "R",
+ "Date": "2019-04-08",
+ "Title": "Export Tables to LaTeX or HTML",
+ "Authors@R": "c(person(\"David B.\", \"Dahl\", role=\"aut\"), person(\"David\", \"Scott\", role=c(\"aut\",\"cre\"), email=\"d.scott@auckland.ac.nz\"), person(\"Charles\", \"Roosen\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=\"aut\"), person(\"Jonathan\", \"Swinton\", role=\"aut\"), person(\"Ajay\", \"Shah\", role=\"ctb\"), person(\"Arne\", \"Henningsen\", role=\"ctb\"), person(\"Benno\", \"Puetz\", role=\"ctb\"), person(\"Bernhard\", \"Pfaff\", role=\"ctb\"), person(\"Claudio\", \"Agostinelli\", role=\"ctb\"), person(\"Claudius\", \"Loehnert\", role=\"ctb\"), person(\"David\", \"Mitchell\", role=\"ctb\"), person(\"David\", \"Whiting\", role=\"ctb\"), person(\"Fernando da\", \"Rosa\", role=\"ctb\"), person(\"Guido\", \"Gay\", role=\"ctb\"), person(\"Guido\", \"Schulz\", role=\"ctb\"), person(\"Ian\", \"Fellows\", role=\"ctb\"), person(\"Jeff\", \"Laake\", role=\"ctb\"), person(\"John\", \"Walker\", role=\"ctb\"), person(\"Jun\", \"Yan\", role=\"ctb\"), person(\"Liviu\", \"Andronic\", role=\"ctb\"), person(\"Markus\", \"Loecher\", role=\"ctb\"), person(\"Martin\", \"Gubri\", role=\"ctb\"), person(\"Matthieu\", \"Stigler\", role=\"ctb\"), person(\"Robert\", \"Castelo\", role=\"ctb\"), person(\"Seth\", \"Falcon\", role=\"ctb\"), person(\"Stefan\", \"Edwards\", role=\"ctb\"), person(\"Sven\", \"Garbade\", role=\"ctb\"), person(\"Uwe\", \"Ligges\", role=\"ctb\"))",
+ "Maintainer": "David Scott <d.scott@auckland.ac.nz>",
+ "Imports": [
"stats",
"utils"
],
- "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2"
+ "Suggests": [
+ "knitr",
+ "plm",
+ "zoo",
+ "survival"
+ ],
+ "VignetteBuilder": "knitr",
+ "Description": "Coerce data to LaTeX and HTML tables.",
+ "URL": "http://xtable.r-forge.r-project.org/",
+ "Depends": [
+ "R (>= 2.10.0)"
+ ],
+ "License": "GPL (>= 2)",
+ "Repository": "CRAN",
+ "NeedsCompilation": "no",
+ "Author": "David B. Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]"
},
"yaml": {
"Package": "yaml",
"Version": "2.3.10",
"Source": "Repository",
- "Repository": "CRAN",
- "Hash": "51dab85c6c98e50a18d7551e9d49f76c"
+ "Type": "Package",
+ "Title": "Methods to Convert R Data to YAML and Back",
+ "Date": "2024-07-22",
+ "Suggests": [
+ "RUnit"
+ ],
+ "Author": "Shawn P Garbett [aut], Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb], Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb], Michael Quinn [ctb], Zhian N. Kamvar [ctb], Charlie Gao [ctb]",
+ "Maintainer": "Shawn Garbett <shawn.garbett@vumc.org>",
+ "License": "BSD_3_clause + file LICENSE",
+ "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter (<https://pyyaml.org/wiki/LibYAML>) for R.",
+ "URL": "https://github.com/vubiostat/r-yaml/",
+ "BugReports": "https://github.com/vubiostat/r-yaml/issues",
+ "NeedsCompilation": "yes",
+ "Repository": "CRAN"
}
}
}
diff --git a/renv/activate.R b/renv/activate.R
index c360bf2..2fe247d 100644
--- a/renv/activate.R
+++ b/renv/activate.R
@@ -2,7 +2,7 @@
local({
# the requested version of renv
- version <- "1.0.9"
+ version <- "1.1.1"
attr(version, "sha") <- NULL
# the project directory
@@ -42,7 +42,7 @@ local({
return(FALSE)
# next, check environment variables
- # TODO: prefer using the configuration one in the future
+ # prefer using the configuration one in the future
envvars <- c(
"RENV_CONFIG_AUTOLOADER_ENABLED",
"RENV_AUTOLOADER_ENABLED",
@@ -135,12 +135,12 @@ local({
# R help links
pattern <- "`\\?(renv::(?:[^`])+)`"
- replacement <- "`\033]8;;ide:help:\\1\a?\\1\033]8;;\a`"
+ replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`"
text <- gsub(pattern, replacement, text, perl = TRUE)
# runnable code
pattern <- "`(renv::(?:[^`])+)`"
- replacement <- "`\033]8;;ide:run:\\1\a\\1\033]8;;\a`"
+ replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`"
text <- gsub(pattern, replacement, text, perl = TRUE)
# return ansified text
@@ -209,10 +209,6 @@ local({
}
- startswith <- function(string, prefix) {
- substring(string, 1, nchar(prefix)) == prefix
- }
-
bootstrap <- function(version, library) {
friendly <- renv_bootstrap_version_friendly(version)
@@ -368,8 +364,7 @@ local({
quiet = TRUE
)
- if ("headers" %in% names(formals(utils::download.file)))
- {
+ if ("headers" %in% names(formals(utils::download.file))) {
headers <- renv_bootstrap_download_custom_headers(url)
if (length(headers) && is.character(headers))
args$headers <- headers
@@ -457,9 +452,8 @@ local({
# add custom headers if available -- note that
# utils::available.packages() will pass this to download.file()
- if ("headers" %in% names(formals(utils::download.file)))
- {
- headers <- renv_bootstrap_download_custom_headers(url)
+ if ("headers" %in% names(formals(utils::download.file))) {
+ headers <- renv_bootstrap_download_custom_headers(repos)
if (length(headers) && is.character(headers))
args$headers <- headers
}
@@ -565,6 +559,9 @@ local({
# prepare download options
token <- renv_bootstrap_github_token()
+ if (is.null(token))
+ token <- ""
+
if (nzchar(Sys.which("curl")) && nzchar(token)) {
fmt <- "--location --fail --header \"Authorization: token %s\""
extra <- sprintf(fmt, token)
@@ -953,8 +950,14 @@ local({
}
renv_bootstrap_validate_version_dev <- function(version, description) {
+
expected <- description[["RemoteSha"]]
- is.character(expected) && startswith(expected, version)
+ if (!is.character(expected))
+ return(FALSE)
+
+ pattern <- sprintf("^\\Q%s\\E", version)
+ grepl(pattern, expected, perl = TRUE)
+
}
renv_bootstrap_validate_version_release <- function(version, description) {
@@ -1134,10 +1137,10 @@ local({
renv_bootstrap_exec <- function(project, libpath, version) {
if (!renv_bootstrap_load(project, libpath, version))
- renv_bootstrap_run(version, libpath)
+ renv_bootstrap_run(project, libpath, version)
}
- renv_bootstrap_run <- function(version, libpath) {
+ renv_bootstrap_run <- function(project, libpath, version) {
# perform bootstrap
bootstrap(version, libpath)
@@ -1148,7 +1151,7 @@ local({
# try again to load
if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) {
- return(renv::load(project = getwd()))
+ return(renv::load(project = project))
}
# failed to download or load renv; warn the user
@@ -1194,98 +1197,101 @@ local({
jsonlite::fromJSON(txt = text, simplifyVector = FALSE)
}
- renv_json_read_default <- function(file = NULL, text = NULL) {
-
- # find strings in the JSON
- text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n")
- pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]'
- locs <- gregexpr(pattern, text, perl = TRUE)[[1]]
-
- # if any are found, replace them with placeholders
- replaced <- text
- strings <- character()
- replacements <- character()
-
- if (!identical(c(locs), -1L)) {
-
- # get the string values
- starts <- locs
- ends <- locs + attr(locs, "match.length") - 1L
- strings <- substring(text, starts, ends)
-
- # only keep those requiring escaping
- strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE)
-
- # compute replacements
- replacements <- sprintf('"\032%i\032"', seq_along(strings))
-
- # replace the strings
- mapply(function(string, replacement) {
- replaced <<- sub(string, replacement, replaced, fixed = TRUE)
- }, strings, replacements)
+ renv_json_read_patterns <- function() {
+
+ list(
+
+ # objects
+ list("{", "\t\n\tobject(\t\n\t"),
+ list("}", "\t\n\t)\t\n\t"),
+
+ # arrays
+ list("[", "\t\n\tarray(\t\n\t"),
+ list("]", "\n\t\n)\n\t\n"),
+
+ # maps
+ list(":", "\t\n\t=\t\n\t")
+
+ )
+
+ }
+ renv_json_read_envir <- function() {
+
+ envir <- new.env(parent = emptyenv())
+
+ envir[["+"]] <- `+`
+ envir[["-"]] <- `-`
+
+ envir[["object"]] <- function(...) {
+ result <- list(...)
+ names(result) <- as.character(names(result))
+ result
}
-
- # transform the JSON into something the R parser understands
- transformed <- replaced
- transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE)
- transformed <- gsub("[[{]", "list(", transformed, perl = TRUE)
- transformed <- gsub("[]}]", ")", transformed, perl = TRUE)
- transformed <- gsub(":", "=", transformed, fixed = TRUE)
- text <- paste(transformed, collapse = "\n")
-
- # parse it
- json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]]
-
- # construct map between source strings, replaced strings
- map <- as.character(parse(text = strings))
- names(map) <- as.character(parse(text = replacements))
-
- # convert to list
- map <- as.list(map)
-
- # remap strings in object
- remapped <- renv_json_read_remap(json, map)
-
- # evaluate
- eval(remapped, envir = baseenv())
-
+
+ envir[["array"]] <- list
+
+ envir[["true"]] <- TRUE
+ envir[["false"]] <- FALSE
+ envir[["null"]] <- NULL
+
+ envir
+
}
- renv_json_read_remap <- function(json, map) {
-
- # fix names
- if (!is.null(names(json))) {
- lhs <- match(names(json), names(map), nomatch = 0L)
- rhs <- match(names(map), names(json), nomatch = 0L)
- names(json)[rhs] <- map[lhs]
+ renv_json_read_remap <- function(object, patterns) {
+
+ # repair names if necessary
+ if (!is.null(names(object))) {
+
+ nms <- names(object)
+ for (pattern in patterns)
+ nms <- gsub(pattern[[2L]], pattern[[1L]], nms, fixed = TRUE)
+ names(object) <- nms
+
}
-
- # fix values
- if (is.character(json))
- return(map[[json]] %||% json)
-
- # handle true, false, null
- if (is.name(json)) {
- text <- as.character(json)
- if (text == "true")
- return(TRUE)
- else if (text == "false")
- return(FALSE)
- else if (text == "null")
- return(NULL)
+
+ # repair strings if necessary
+ if (is.character(object)) {
+ for (pattern in patterns)
+ object <- gsub(pattern[[2L]], pattern[[1L]], object, fixed = TRUE)
}
+
+ # recurse for other objects
+ if (is.recursive(object))
+ for (i in seq_along(object))
+ object[i] <- list(renv_json_read_remap(object[[i]], patterns))
+
+ # return remapped object
+ object
+
+ }
- # recurse
- if (is.recursive(json)) {
- for (i in seq_along(json)) {
- json[i] <- list(renv_json_read_remap(json[[i]], map))
- }
- }
+ renv_json_read_default <- function(file = NULL, text = NULL) {
- json
+ # read json text
+ text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n")
+
+ # convert into something the R parser will understand
+ patterns <- renv_json_read_patterns()
+ transformed <- text
+ for (pattern in patterns)
+ transformed <- gsub(pattern[[1L]], pattern[[2L]], transformed, fixed = TRUE)
+
+ # parse it
+ rfile <- tempfile("renv-json-", fileext = ".R")
+ on.exit(unlink(rfile), add = TRUE)
+ writeLines(transformed, con = rfile)
+ json <- parse(rfile, keep.source = FALSE, srcfile = NULL)[[1L]]
+ # evaluate in safe environment
+ result <- eval(json, envir = renv_json_read_envir())
+
+ # fix up strings if necessary
+ renv_json_read_remap(result, patterns)
+
}
+
# load the renv profile, if any
renv_bootstrap_profile_load(project)
--
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