README.md

bin/Script_barplot_kaiju.py

bin/Script_hist_kaiju.R

bin/Script_quantification_clusters_opti.py

bin/Script_rename_contigs_genes.py

bin/aln2taxaffi.py

bin/assemblathon_stats.pl

bin/cd_hit_produce_table_clstr.py

bin/fasta_length.pl

bioinfo_bwa_samtools

bioinfo_bwa_samtools_subread

communication/Poster_JOBIM2019.pdf

communication/Poster_JOBIM2019.svg

conf/modules.config

conf/singularity.config

docs/Pipeline.png

env/Singularity_recipe_metagWGS_dependancies

env/metagWGS_dependancies.yml

main.nf

nextflow.config